HHsearch alignment for GI: 254781167 and conserved domain: cd02930
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.04 E-value=8.6e-10 Score=91.98 Aligned_cols=213 Identities=14% Similarity=0.158 Sum_probs=143.3
Q ss_pred HCCCEEEECCCCCCHH--HHCC------CH------HHHH-HCCCCCCCEEEEEECCC----------------------
Q ss_conf 2898299817033247--7608------97------8983-02745784699982699----------------------
Q gi|254781167|r 16 LTNNALLYTEMIVADA--ILRG------DK------KNIL-GFSTQEKPLALQIGGAD---------------------- 58 (322)
Q Consensus 16 ~~~~~~~~TEmi~a~~--l~~~------~~------~~~~-~~~~~e~p~~~Ql~g~~---------------------- 58 (322)
T Consensus 44 ~gG~glIi~e~~~v~~~g~~~~~~~~i~~d~~i~~~k~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~ps~~~~~~~~~~ 123 (353)
T cd02930 44 RGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFT 123 (353)
T ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67863489762898804176999763279999999999999999769979997314786668988818987778889998
Q ss_pred H------------HHHHHHHHHHHCCCCCEEEECCCCC-------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf 8------------9999988753104537774425641-------3677--6668899998558999999999850279-
Q gi|254781167|r 59 I------------SKLVEAAKIVEDFGYNEINLNVGCP-------SARV--HEGSFGACLMLNPDIVGDCIAAMCKALS- 116 (322)
Q Consensus 59 p------------~~~~~aa~~~~~~g~~~idlN~GCP-------~~~v--~~~g~GaaLl~~p~~~~~iv~~~~~~~~- 116 (322)
T Consensus 124 p~~mt~~eI~~ii~~f~~AA~rA~~AGfDgVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~eNR~Rf~~Eiv~aVr~~vg~ 203 (353)
T cd02930 124 PRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGE 203 (353)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 86599999999999999999999982999899625676148773387547885745798788879999999999997099
Q ss_pred -EEEEEEEECC--CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHH-HHHHHHHHHCCCCCCC
Q ss_conf -0699986113--45665322014554320001220121001356640257742122766104-6787666738875302
Q gi|254781167|r 117 -IPVTVKCRIG--VDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDY-DIVYEIKKENPDLFIG 192 (322)
Q Consensus 117 -~pvsvK~RlG--~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~-~~i~~l~~~~~~~~i~ 192 (322)
T Consensus 204 d~~v~~Ris~~d~~~~G~~~~e~~~~~~~l~~~GvD~i~vs~G--~~~~~~~~~~~~~p~g~~~~~a~~ir~~~-~~Pvi 280 (353)
T cd02930 204 DFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIG--WHEARVPTIATSVPRGAFAWATAKLKRAV-DIPVI 280 (353)
T ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEE
T ss_conf 8749997360126899989999999999999819999996377--44466875334577236699999988754-83489
Q ss_pred CCCCCCCHHHHHHHHH-C-CCCEEEECCCCCHHHHHHHHHH
Q ss_conf 5777789989888742-0-3523441220001243999999
Q gi|254781167|r 193 LNGGLEDMSQALKILP-S-VDGVMIGRAAYKNSAMLTTVDE 231 (322)
Q Consensus 193 ~NGdi~~~~~a~~~l~-~-~dgvMigRga~~~P~if~~I~~ 231 (322)
T Consensus 281 ~~G~i~~p~~ae~~l~~g~aD~V~~gR~liadPdl~~K~~~ 321 (353)
T cd02930 281 ASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAAA 321 (353)
T ss_pred ECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHC
T ss_conf 65997989999999987996247840998769369999981