HHsearch alignment for GI: 254781167 and conserved domain: cd03319
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.75 E-value=0.048 Score=34.86 Aligned_cols=135 Identities=18% Similarity=0.187 Sum_probs=90.7
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 78469998269989999988753104537774425641367766688999985589999999998502790699986113
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIG 126 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG 126 (322)
T Consensus 123 ~i~~~~~~~~~~~e~~~~~~~~~~~~G~~~~KiKvg~~----------------~~~d~~~v~~vr~~~--~-~~~l~vD 183 (316)
T cd03319 123 PLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGGD----------------LEDDIERIRAIREAA--P-DARLRVD 183 (316)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC----------------HHHHHHHHHHHHHHC--C-CCEEEEE
T ss_conf 74046506899999999999999975987686324899----------------799999999999668--9-9629984
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 45665322014554320001220121001356640257742122766104678766673887530257777899898887
Q gi|254781167|r 127 VDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKI 206 (322)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~ 206 (322)
T Consensus 184 aN~~~~~~~A~~~~~~l~~~~i~~iE----------------qP~~~~d~~~~~~l~~~~-~~pIa~dEs~~~~~d~~~~ 246 (316)
T cd03319 184 ANQGWTPEEAVELLRELAELGVELIE----------------QPVPAGDDDGLAYLRDKS-PLPIMADESCFSAADAARL 246 (316)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHC----------------CCCCCCCHHHHHHHHHHC-CCCEEECCCCCCHHHHHHH
T ss_conf 68888999999999975244344430----------------898999999999999968-9999935887999999999
Q ss_pred HH--CCCCEEEEC
Q ss_conf 42--035234412
Q gi|254781167|r 207 LP--SVDGVMIGR 217 (322)
Q Consensus 207 l~--~~dgvMigR 217 (322)
T Consensus 247 ~~~~a~d~v~~k~ 259 (316)
T cd03319 247 AGGGAYDGINIKL 259 (316)
T ss_pred HHCCCCCEEEECC
T ss_conf 9769988698451