HHsearch alignment for GI: 254781167 and conserved domain: cd03332

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=97.90  E-value=9.3e-05  Score=54.87  Aligned_cols=156  Identities=17%  Similarity=0.220  Sum_probs=100.8

Q ss_pred             CCCEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEECCCCCHHH----HHHHH-----------------------------
Q ss_conf             7846999826-9989999988753104537774425641367----76668-----------------------------
Q gi|254781167|r   47 EKPLALQIGG-ADISKLVEAAKIVEDFGYNEINLNVGCPSAR----VHEGS-----------------------------   92 (322)
Q Consensus        47 e~p~~~Ql~g-~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~----v~~~g-----------------------------   92 (322)
T Consensus       137 ~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~aLvlTVD~Pv~G~Rerd~r~g~~P~~~~~~~~~~~~~p~~~~~~~~~~~~  216 (383)
T cd03332         137 DAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGE  216 (383)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCC
T ss_conf             99639999515888999999999997389779992268666876545532688643303677754788999973256776


Q ss_pred             -------HHHHH------HHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH--HHHH
Q ss_conf             -------89999------85589999999998502790699986113456653220145543200012201210--0135
Q gi|254781167|r   93 -------FGACL------MLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI--HARK  157 (322)
Q Consensus        93 -------~GaaL------l~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti--H~Rt  157 (322)
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~d~~ltW~di~wlr~~w~~plilKG---I-------~~~eDA~~A~~~G~dgIiVSNHGG-  285 (383)
T cd03332         217 DPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLKG---I-------LHPDDARRAVEAGVDGVVVSNHGG-  285 (383)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEECC---C-------CCHHHHHHHHHCCCCEEEEECCCC-
T ss_conf             54567750145999998537888998999999987699853235---6-------899999999975998899807863-


Q ss_pred             HHHHCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHH
Q ss_conf             66402577421227661046787666738-8753025777789989888742-0352344122000124399
Q gi|254781167|r  158 AILKGLSPKDNRKIPNLDYDIVYEIKKEN-PDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSAMLT  227 (322)
Q Consensus       158 ~~~~g~s~~~~~~~~~~~~~~i~~l~~~~-~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~if~  227 (322)
T Consensus       286 --------R-QLD~apa~i~~LpeI~~aV~~~~~V~~DgGIRrG~DV~KAlALGA~~V~iGR-----p~l~g  343 (383)
T cd03332         286 --------R-QVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGR-----PYAYG  343 (383)
T ss_pred             --------C-CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECH-----HHHHH
T ss_conf             --------4-4678832789999999984799849997997867999999976999898778-----99998