HHsearch alignment for GI: 254781167 and conserved domain: cd04730
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=91.15 E-value=0.84 Score=25.70 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 58999999999850279069998611345665322014554320001220121001356640257742122766104678
Q gi|254781167|r 100 NPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIV 179 (322)
Q Consensus 100 ~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i 179 (322)
T Consensus 37 ~~~~l~~~i~~~~~~~~~pfgvnl~~-~~---~~~~~~~~~~~~~~~~v~~v~~~~g~---------------p--~~~v 95 (236)
T cd04730 37 TPEALRAEIRKIRALTDKPFGVNLLV-PS---SNPDFEALLEVALEEGVPVVSFSFGP---------------P--AEVV 95 (236)
T ss_pred CHHHHHHHHHHHHHHCCCCEEECCCC-CC---CCCCHHHHHHHHHHCCCCEEEECCCC---------------C--HHHH
T ss_conf 99999999999997469972443324-67---76368999999997699999987989---------------7--8999
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEE
Q ss_conf 76667388753025777789989888742-0352344
Q gi|254781167|r 180 YEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMI 215 (322)
Q Consensus 180 ~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMi 215 (322)
T Consensus 96 ~~l~~~g--~~v~--~~v~s~~~A~~a~~~GaD~iv~ 128 (236)
T cd04730 96 ERLKAAG--IKVI--PTVTSVEEARKAEAAGADALVA 128 (236)
T ss_pred HHHHHCC--CEEE--EECCCHHHHHHHHHCCCCEEEE
T ss_conf 9999829--9899--9589899999999818998999