HHsearch alignment for GI: 254781167 and conserved domain: cd04732
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=96.50 E-value=0.0066 Score=41.22 Aligned_cols=91 Identities=18% Similarity=0.302 Sum_probs=71.4
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCE
Q ss_conf 01455432000122012100135664025774212276610467876667388753025777789989888742-03523
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGV 213 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgv 213 (322)
T Consensus 30 dP~~~a~~~~~~g~d~l~i~DLdaa~---------~~~~~n~~~I~~I~~~~-~~pi~vGGGIrs~~~~~~l~~~Ga~kv 99 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAK---------GGEPVNLELIEEIVKAV-GIPVQVGGGIRSLEDIERLLDLGVSRV 99 (234)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCHH---------HCCCCHHHHHHHHHHHC-CCCEEECCCCCCHHHHHHHHHCCCCEE
T ss_conf 99999999998699989999675303---------08911599999999767-956897377175999999986488718
Q ss_pred EEECCCCCHHHHHHHHHHHHCC
Q ss_conf 4412200012439999998719
Q gi|254781167|r 214 MIGRAAYKNSAMLTTVDEYFSN 235 (322)
Q Consensus 214 MigRga~~~P~if~~I~~~l~~ 235 (322)
T Consensus 100 vi~s~~~~~~~~~~~~~~~~G~ 121 (234)
T cd04732 100 IIGTAAVKNPELVKELLKEYGG 121 (234)
T ss_pred EECCCHHHCHHHHHHHHHHCCC
T ss_conf 9714011082789999998297