HHsearch alignment for GI: 254781167 and conserved domain: cd04734

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.08  E-value=2.8e-10  Score=95.60  Aligned_cols=226  Identities=16%  Similarity=0.183  Sum_probs=146.2

Q ss_pred             CCCHHHHHHHH-HHCCCEEEECCCCCC--HHHHCCC------H------HHHH-HCCCCCCCEEEEEECC----------
Q ss_conf             86078999999-828982998170332--4776089------7------8983-0274578469998269----------
Q gi|254781167|r    4 WTDRHYRFFAR-LLTNNALLYTEMIVA--DAILRGD------K------KNIL-GFSTQEKPLALQIGGA----------   57 (322)
Q Consensus         4 ~Td~~fR~l~r-~~~~~~~~~TEmi~a--~~l~~~~------~------~~~~-~~~~~e~p~~~Ql~g~----------   57 (322)
T Consensus        31 ~~~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~  110 (343)
T cd04734          31 PSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQLTHLGRRGDGDGSW  110 (343)
T ss_pred             CCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
T ss_conf             99999999999967898379970067646556899987668999999999999999735881898711577666766799


Q ss_pred             ----------------C------------HHHHHHHHHHHHCCCCCEEEECCCC---------CHHHHHHHHHHHHHHHH
Q ss_conf             ----------------9------------8999998875310453777442564---------13677666889999855
Q gi|254781167|r   58 ----------------D------------ISKLVEAAKIVEDFGYNEINLNVGC---------PSARVHEGSFGACLMLN  100 (322)
Q Consensus        58 ----------------~------------p~~~~~aa~~~~~~g~~~idlN~GC---------P~~~v~~~g~GaaLl~~  100 (322)
T Consensus       111 ~~~~~pS~~~~~~~~~~p~~mt~eeI~~ii~~f~~AA~~A~~AGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR  190 (343)
T cd04734         111 LPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENR  190 (343)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf             86268888866567987944899999999999999999999739988984457774699846985589967679888999


Q ss_pred             HHHHHHHHHHHHCCC--CEEEEEEEECCCCC---CCCCCCHHHHHHHHCCCC-CCHHHHHHHHHHH-HCCCC-CCCCCCC
Q ss_conf             899999999985027--90699986113456---653220145543200012-2012100135664-02577-4212276
Q gi|254781167|r  101 PDIVGDCIAAMCKAL--SIPVTVKCRIGVDD---QIPAVALRNLVKSIKKSG-VNGIWIHARKAIL-KGLSP-KDNRKIP  172 (322)
Q Consensus       101 p~~~~~iv~~~~~~~--~~pvsvK~RlG~~~---~~~~~~~~~~~~~~~~~g-~~~itiH~Rt~~~-~g~s~-~~~~~~~  172 (322)
T Consensus       191 ~Rf~~EIi~~Ir~~vg~~f~i~~Ris~-~~~~~~g~~~~e~~~~~~~l~~~G~vD~l~vs~g~~~~~~~~~~~~p~~~~~  269 (343)
T cd04734         191 MRFLLEVLAAVRAAVGPDFIVGIRISG-DEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMP  269 (343)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECC-CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHCCCCCCCC
T ss_conf             899999999999981987761588676-2356898998999999999996699768996567543322211006876677


Q ss_pred             CC-HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             61-0467876667388753025777789989888742--03523441220001243999999
Q gi|254781167|r  173 NL-DYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVDE  231 (322)
Q Consensus       173 ~~-~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~~  231 (322)
T Consensus       270 ~g~~~~~a~~ik~~~-~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ladPd~v~k~~~  330 (343)
T cd04734         270 PGPFLPLAARIKQAV-DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKARE  330 (343)
T ss_pred             CCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHHHCCCHHHHHHC
T ss_conf             643488999999972-9859997998999999999987996216978999978119999976