HHsearch alignment for GI: 254781167 and conserved domain: cd04743
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=94.92 E-value=0.27 Score=29.31 Aligned_cols=135 Identities=18% Similarity=0.241 Sum_probs=78.3
Q ss_pred CCCCEEEEEECCCHHHHH-HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 578469998269989999-9887531045377744256413677666889999855899999999985027906999861
Q gi|254781167|r 46 QEKPLALQIGGADISKLV-EAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCR 124 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~-~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~R 124 (322)
T Consensus 54 tdkPFGVNi~~~~p~~~~~~~~~vi~e~kv~vv~~agG~P~-----------------~~~----~Lk~-aGikvi~~V- 110 (320)
T cd04743 54 GDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGRPD-----------------QAR----ALEA-IGISTYLHV- 110 (320)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCH-----------------HHH----HHHH-CCCEEEEEC-
T ss_conf 59984455751388722578888886169989995688907-----------------879----9998-699799977-
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHH-----HHCCCCCCCCCCCCC
Q ss_conf 13456653220145543200012201210013566402577421227661046787-666-----738875302577778
Q gi|254781167|r 125 IGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVY-EIK-----KENPDLFIGLNGGLE 198 (322)
Q Consensus 125 lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~-~l~-----~~~~~~~i~~NGdi~ 198 (322)
T Consensus 111 ------~----Sv~lAk~~~~~GaDavIaEG~Ea--GGHiG--~~~Tm-~Lvpqvvdav~~~~~~~~~~~IPViaAGGI~ 175 (320)
T cd04743 111 ------P----SPGLLKQFLENGARKFIFEGREC--GGHVG--PRSSF-VLWESAIDALLAANGPDKAGKIHLLFAGGIH 175 (320)
T ss_pred ------C----CHHHHHHHHHCCCCEEEEECCCC--CCCCC--CCCHH-HHHHHHHHHHHCCCCCCCCCCCCEEEECCCC
T ss_conf ------9----99999999984999999957457--67767--53013-4059898898603566556787489976745
Q ss_pred CHHHHHHHHH-CCC--------CEEEECC
Q ss_conf 9989888742-035--------2344122
Q gi|254781167|r 199 DMSQALKILP-SVD--------GVMIGRA 218 (322)
Q Consensus 199 ~~~~a~~~l~-~~d--------gvMigRg 218 (322)
T Consensus 176 DGRg~aaa~aLgA~~a~~g~~~GVqmGTr 204 (320)
T cd04743 176 DERSAAMVSALAAPLAERGAKVGVLMGTA 204 (320)
T ss_pred CCHHHHHHHHHCCCHHHCCCCCEEEEECH
T ss_conf 61899999983884223156222786044