HHsearch alignment for GI: 254781167 and conserved domain: cd04747

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.60  E-value=1.1e-07  Score=76.48  Aligned_cols=228  Identities=20%  Similarity=0.258  Sum_probs=134.8

Q ss_pred             CCHHHHHHH-HHHCCCEEEECCCCCCH---HHH-------CCCH-----HHHH-HCCCCCCCEEEEEE--CC--------
Q ss_conf             607899999-98289829981703324---776-------0897-----8983-02745784699982--69--------
Q gi|254781167|r    5 TDRHYRFFA-RLLTNNALLYTEMIVAD---AIL-------RGDK-----KNIL-GFSTQEKPLALQIG--GA--------   57 (322)
Q Consensus         5 Td~~fR~l~-r~~~~~~~~~TEmi~a~---~l~-------~~~~-----~~~~-~~~~~e~p~~~Ql~--g~--------   57 (322)
T Consensus        32 t~~~~~yy~~rA~GG~Gliite~~~V~~~~~~~~~~~~~~~~d~~i~~~r~la~avH~~G~~~~~QL~H~G~~~~~~~~~  111 (361)
T cd04747          32 GQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWKKVVDEVHAAGGKIAPQLWHVGAMRKLGTPP  111 (361)
T ss_pred             CHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC
T ss_conf             99999999999768961079706710562135899877758999999999999999976997987000356666666788


Q ss_pred             C------------------------------HHHHHHHHHHHHCCCCCEEEECCCC---------CHHHHHHHHHHHHHH
Q ss_conf             9------------------------------8999998875310453777442564---------136776668899998
Q gi|254781167|r   58 D------------------------------ISKLVEAAKIVEDFGYNEINLNVGC---------PSARVHEGSFGACLM   98 (322)
Q Consensus        58 ~------------------------------p~~~~~aa~~~~~~g~~~idlN~GC---------P~~~v~~~g~GaaLl   98 (322)
T Consensus       112 ~~~~~~~~ps~~~~~~~~~~~~mt~eeI~~ii~~f~~AA~rA~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGSlE  191 (361)
T cd04747         112 FPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLA  191 (361)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf             88988668756667889888879999999999999999999998399989951044658998358743889887899879


Q ss_pred             HHHHHHHHHHHHHHCCC--CEEEEEEEECCCCCC-------CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             55899999999985027--906999861134566-------532201455432000122012100135664025774212
Q gi|254781167|r   99 LNPDIVGDCIAAMCKAL--SIPVTVKCRIGVDDQ-------IPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNR  169 (322)
Q Consensus        99 ~~p~~~~~iv~~~~~~~--~~pvsvK~RlG~~~~-------~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~  169 (322)
T Consensus       192 NR~Rf~~Eii~aVr~~vg~df~vg~Ris-~~~~~~~~~~~~~~~ee~~~~~~~l~~~GvD~i~~s~~~~----~~p~---  263 (361)
T cd04747         192 ARSRFAAEVVKAIRAAVGPDFPIILRFS-QWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRF----WEPE---  263 (361)
T ss_pred             HHCCHHHHHHHHHHHHHCCCCEEEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC----CCCC---
T ss_conf             8473699999999997299875999967-7657676655679999999999999977999898413445----6765---


Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCC------------------CCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHH
Q ss_conf             27661046787666738875302577------------------7789989888742--035234412200012439999
Q gi|254781167|r  170 KIPNLDYDIVYEIKKENPDLFIGLNG------------------GLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTV  229 (322)
Q Consensus       170 ~~~~~~~~~i~~l~~~~~~~~i~~NG------------------di~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I  229 (322)
T Consensus       264 ~~~-~~~~~~~~~k~~~-~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~e~ae~~l~~G~~D~V~~gR~llaDP~~v~K~  341 (361)
T cd04747         264 FEG-SELNLAGWTKKLT-GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKV  341 (361)
T ss_pred             CCC-CCCCHHHHHHHHC-CCCEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             677-7444889988862-89758644410356777775124544777999999999869941389759999754499999


Q ss_pred             HHHHCCCCCCCCCCHH
Q ss_conf             9987199888899988
Q gi|254781167|r  230 DEYFSNPLTGSSPIKT  245 (322)
Q Consensus       230 ~~~l~~~~~~~~p~~~  245 (322)
T Consensus       342 ~---~Gr~~dIrP~~~  354 (361)
T cd04747         342 R---EGRLDELIPFSR  354 (361)
T ss_pred             H---CCCHHHCCCCCH
T ss_conf             8---599421268997