HHsearch alignment for GI: 254781167 and conserved domain: pfam00290
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=96.96 E-value=0.02 Score=37.76 Aligned_cols=168 Identities=17% Similarity=0.244 Sum_probs=85.7
Q ss_pred CCCEEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHH----HHHHHHHHHHHHH--HHHHHHHHHHHHHC-CCCE
Q ss_conf 7846999826998--999998875310453777442564136----7766688999985--58999999999850-2790
Q gi|254781167|r 47 EKPLALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSA----RVHEGSFGACLML--NPDIVGDCIAAMCK-ALSI 117 (322)
Q Consensus 47 e~p~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~----~v~~~g~GaaLl~--~p~~~~~iv~~~~~-~~~~ 117 (322)
T Consensus 8 ~~ali~yi~aG~P~~~~~~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~~ 87 (258)
T pfam00290 8 EAAFVPFVTAGDPDLETTLEILEALEEAGADAIELGIPFSDPLADGPTIQRANLRALAGGMTLDQTLELVEEIRNKGTSV 87 (258)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 96589887073899899999999999769999997899888766589999999999986996999999999855128998
Q ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH-------------------------------HHHHH-------
Q ss_conf 6999861134566532201455432000122012100-------------------------------13566-------
Q gi|254781167|r 118 PVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH-------------------------------ARKAI------- 159 (322)
Q Consensus 118 pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH-------------------------------~Rt~~------- 159 (322)
T Consensus 88 pivlM~---Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~~l~~I~lvsPtt~~~Ri~~i~~~s~g 164 (258)
T pfam00290 88 PIVLMT---YYNPVLNYGIERFYAQAAEAGVDGLIIPDLPPEEADPLREAAEKHGIDLIFLVAPTTSDERLKTISEAASG 164 (258)
T ss_pred CEEEEE---ECHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 889985---20889872999999999975997787079998899999999984584358884588819999999960898
Q ss_pred ------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf ------402577421227661046787666738875302577778998988874203523441220
Q gi|254781167|r 160 ------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAA 219 (322)
Q Consensus 160 ------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga 219 (322)
T Consensus 165 FiY~vs~~GvTG~~~~-~~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~~~~aDGvIVGSai 228 (258)
T pfam00290 165 FVYLVSRAGVTGARNA-FNAQLDELVERLKKY-TNVPVAVGFGISTPEHVKKIAAGADGVIVGSAI 228 (258)
T ss_pred EEEEEECCCCCCCCCC-CCHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHCCCCEEEECHHH
T ss_conf 0899853445676555-638899999999860-699848994579999999998159999984999