HHsearch alignment for GI: 254781167 and conserved domain: pfam00724
>pfam00724 Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family.
Probab=99.14 E-value=8.8e-10 Score=91.92 Aligned_cols=224 Identities=17% Similarity=0.201 Sum_probs=143.1
Q ss_pred CCCHHHHHHHHH-HCCCEEEECCCCCCH--HHHCC------CHH------HHH-HCCCCCCCEEEEEE--CCC-------
Q ss_conf 860789999998-289829981703324--77608------978------983-02745784699982--699-------
Q gi|254781167|r 4 WTDRHYRFFARL-LTNNALLYTEMIVAD--AILRG------DKK------NIL-GFSTQEKPLALQIG--GAD------- 58 (322)
Q Consensus 4 ~Td~~fR~l~r~-~~~~~~~~TEmi~a~--~l~~~------~~~------~~~-~~~~~e~p~~~Ql~--g~~------- 58 (322)
T Consensus 33 ~t~~~~~~y~~rA~gG~GlIi~e~~~V~~~~~~~~~~~~i~~d~~i~~~~~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~ 112 (336)
T pfam00724 33 VPERLAEYYSQRAQGGGTLIITEAVFVDPKGGGFDNQPGLWDDEQVEGWKKLTEAVHENGSKIGVQLWHLGREAPPEYLE 112 (336)
T ss_pred CCHHHHHHHHHHHCCCCCEEEECCCEECHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf 99999999999964697489968717882005799987467689999999999999855984999703577768823378
Q ss_pred -----------------------------HHHHHHHHHHHHCCCCCEEEECCCC---------CHHHHHHHHHHHHHHHH
Q ss_conf -----------------------------8999998875310453777442564---------13677666889999855
Q gi|254781167|r 59 -----------------------------ISKLVEAAKIVEDFGYNEINLNVGC---------PSARVHEGSFGACLMLN 100 (322)
Q Consensus 59 -----------------------------p~~~~~aa~~~~~~g~~~idlN~GC---------P~~~v~~~g~GaaLl~~ 100 (322)
T Consensus 113 ~~~~~~s~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~QFLSp~~N~RtDeYGGslENR 192 (336)
T pfam00724 113 DLGLRPSDPSALPASIKVRELTKEEIKEIIQEFVQAAKRAVEAGFDGVEIHGAHGYLLDQFLSPGSNKRTDEYGGSIENR 192 (336)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 88888878766788988876999999999999999999999829998996142678999862876588977678898897
Q ss_pred HHHHHHHHHHHHCCCC--EEEEEEEECCCCCCC----CCCCHHHHHHHHCCCCCCHHHH-HHHHHHHHCCCC--CCCCCC
Q ss_conf 8999999999850279--069998611345665----3220145543200012201210-013566402577--421227
Q gi|254781167|r 101 PDIVGDCIAAMCKALS--IPVTVKCRIGVDDQI----PAVALRNLVKSIKKSGVNGIWI-HARKAILKGLSP--KDNRKI 171 (322)
Q Consensus 101 p~~~~~iv~~~~~~~~--~pvsvK~RlG~~~~~----~~~~~~~~~~~~~~~g~~~iti-H~Rt~~~~g~s~--~~~~~~ 171 (322)
T Consensus 193 ~Rf~~eIi~aIR~~vg~d~~i~vRis-~~d~~~~g~~~~e~~~~~~~~~~~~g~d~~~~~~~~~~--~~~~~~~~~~~~~ 269 (336)
T pfam00724 193 ARFPLEVVDAVKEAVGEDRPIGYRLS-PDDVFEGGLTGAETLAQFAYAAGELGVRVLDGTRLAYI--HAIEPRVTGPFPV 269 (336)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCEE--ECCCCCCCCCCCC
T ss_conf 54899999999997287766426746-52246899884268999999999838775642766223--2024433578775
Q ss_pred CC-CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-C-CCCEEEECCCCCHHHHHHHHHH
Q ss_conf 66-10467876667388753025777789989888742-0-3523441220001243999999
Q gi|254781167|r 172 PN-LDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-S-VDGVMIGRAAYKNSAMLTTVDE 231 (322)
Q Consensus 172 ~~-~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~-~dgvMigRga~~~P~if~~I~~ 231 (322)
T Consensus 270 ~~~~~~~~~~~~k~~~-~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadPd~~~k~~~ 331 (336)
T pfam00724 270 ETGQQVENNEFIKKVW-KGPVITVGRINDPEFAAEIVEEGRADLVAMGRPFLADPDLVKKAKE 331 (336)
T ss_pred CCCHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHHHCHHHHHHHHC
T ss_conf 6312478999999876-9859996999989999999987994436866999979139999980