HHsearch alignment for GI: 254781167 and conserved domain: pfam03437
>pfam03437 BtpA BtpA family. The BtpA protein is tightly associated with the thylakoid membranes, where it stabilizes the reaction centre proteins of photosystem I.
Probab=95.30 E-value=0.29 Score=29.11 Aligned_cols=147 Identities=14% Similarity=0.228 Sum_probs=81.1
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEE
Q ss_conf 784699982699899999887531045377744256413677666889999855899999999985027--906999861
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL--SIPVTVKCR 124 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~--~~pvsvK~R 124 (322)
T Consensus 80 ~iP~GvnvL~nd~~aalaiA~---a~ga~FIRv~~~~g~-~~~d~G----~~-~~-~a~~~~r~-R~~l~a~v~i~aDV~ 148 (254)
T pfam03437 80 SIPLGINVLRNDAVAALAIAY---AVGADFIRVNVLTGV-AASDQG----IL-EG-NAGELARY-RKLLPSRIKILADVH 148 (254)
T ss_pred CCCEEEEEECCCCHHHHHHHH---HHCCCEEEECCEECE-EECCCC----CC-CC-CHHHHHHH-HHHCCCCCEEEEEEC
T ss_conf 887367776178589999999---829976987137653-335775----31-55-38999999-997199958997550
Q ss_pred CCCCCCCCCCCHHHHHH-HHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 13456653220145543-20001220121001356640257742122766104678766673887530257777899898
Q gi|254781167|r 125 IGVDDQIPAVALRNLVK-SIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQA 203 (322)
Q Consensus 125 lG~~~~~~~~~~~~~~~-~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a 203 (322)
T Consensus 149 ~Kh~~~l~~~~~~~~~~~~~~~~~aDaiivTG~~T------------G~~~~~~~l~~vk~~~~-~PvlvGSGv-t~~Ni 214 (254)
T pfam03437 149 VKHAVHLGNRDIESAVLDTIERGLADAVILSGKTT------------GGEVDLEELKLAKETVP-VPVLVGSGV-NLENL 214 (254)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCC------------CCCCCHHHHHHHHHHCC-CCEEEECCC-CHHHH
T ss_conf 01254579999899999999826898999787302------------79999999999996269-988995798-98899
Q ss_pred HHHHHCCCCEEEECC
Q ss_conf 887420352344122
Q gi|254781167|r 204 LKILPSVDGVMIGRA 218 (322)
Q Consensus 204 ~~~l~~~dgvMigRg 218 (322)
T Consensus 215 ~~~l~~ADG~IVGS~ 229 (254)
T pfam03437 215 EELWSIADGFIVGTS 229 (254)
T ss_pred HHHHHHCCEEEEEHH
T ss_conf 999987899998422