BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781167|ref|YP_003065580.1| tRNA-dihydrouridine synthase A
[Candidatus Liberibacter asiaticus str. psy62]
         (322 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781167|ref|YP_003065580.1| tRNA-dihydrouridine synthase A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 322

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/322 (100%), Positives = 322/322 (100%)

Query: 1   MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADIS 60
           MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADIS
Sbjct: 1   MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADIS 60

Query: 61  KLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVT 120
           KLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVT
Sbjct: 61  KLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVT 120

Query: 121 VKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVY 180
           VKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVY
Sbjct: 121 VKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVY 180

Query: 181 EIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVDEYFSNPLTGS 240
           EIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVDEYFSNPLTGS
Sbjct: 181 EIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVDEYFSNPLTGS 240

Query: 241 SPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVE 300
           SPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVE
Sbjct: 241 SPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVE 300

Query: 301 AGASTATHHIIETAFNLMIESL 322
           AGASTATHHIIETAFNLMIESL
Sbjct: 301 AGASTATHHIIETAFNLMIESL 322


>gi|255764494|ref|YP_003065050.2| molecular chaperone DnaK [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 652

 Score = 24.6 bits (52), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 13/48 (27%)

Query: 158 AILKGLSPKDNRKIPNLDY-------------DIVYEIKKENPDLFIG 192
           A+  GL  KD R +   D+             D V+E+K  N D F+G
Sbjct: 176 ALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLG 223


>gi|254781112|ref|YP_003065525.1| putative amino acid-binding periplasmic ABC transporter protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 274

 Score = 24.3 bits (51), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 32  ILRGDKKNILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYN 75
           ++R D+++I  F         QI G D+S+  +  K    F +N
Sbjct: 133 VVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHN 176


>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 23.5 bits (49), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 250 DFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHG 286
           D  ++   S  +     LH+GGK  Q +  + G  HG
Sbjct: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122


>gi|254780197|ref|YP_003064610.1| triosephosphate isomerase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 264

 Score = 23.1 bits (48), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 193 LNGGLEDMSQA--LKILPSVDGVMIGRAAYKNSAMLTTVD 230
           L GG  D++ A    ++ ++DG+++G A+ ++   L  V+
Sbjct: 209 LYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFLKIVE 248


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.137    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,794
Number of Sequences: 1233
Number of extensions: 8476
Number of successful extensions: 33
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 6
length of query: 322
length of database: 328,796
effective HSP length: 74
effective length of query: 248
effective length of database: 237,554
effective search space: 58913392
effective search space used: 58913392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)