Query gi|254781168|ref|YP_003065581.1| hypothetical protein CLIBASIA_05375 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 30
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 22:28:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781168.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2ra1_A Surface layer protein; 9.9 72 0.0021 15.7 0.0 19 3-21 36-54 (83)
2 >1aky_A Adenylate kinase; ATP: 8.7 1.3E+02 0.0038 14.5 0.9 21 6-26 73-93 (158)
3 >2dkv_A Chitinase; whole struc 5.5 2E+02 0.0059 13.6 0.6 8 23-30 16-23 (51)
4 >1dkc_A PAFP-S, antifungal pep 5.4 1.6E+02 0.0047 14.0 0.1 5 24-28 18-22 (38)
5 >1wmt_A ISTX; neurotoxin, pota 5.2 1.6E+02 0.0046 14.1 -0.1 7 12-18 18-24 (41)
6 >1fyb_A Na-propi, proteinase i 5.1 2.2E+02 0.0065 13.4 0.6 15 2-16 45-59 (60)
7 >1foe_A T-lymphoma invasion an 4.8 3.2E+02 0.0095 12.6 1.9 24 4-28 116-139 (166)
8 >2uvo_A Agglutinin isolectin 1 4.8 2.3E+02 0.0067 13.3 0.5 8 23-30 9-16 (42)
9 >1n1i_A Merozoite surface prot 4.7 2.6E+02 0.0078 13.0 0.7 7 24-30 36-42 (49)
10 >1zjq_A Jingzhaotoxin-VII; inh 4.4 2E+02 0.0059 13.6 -0.1 4 24-27 15-18 (34)
No 1
>>2ra1_A Surface layer protein; triple coiled-coil, S-layer protein, protein binding, sugar binding protein; 2.41A {Bacillus stearothermophilus} (A:330-412)
Probab=9.91 E-value=72 Score=15.68 Aligned_cols=19 Identities=47% Similarity=0.565 Sum_probs=15.3
Q ss_pred EEEHHHHCCCCCCCEEEEE
Q ss_conf 0220221012346536898
Q gi|254781168|r 3 AYELEHISSEKKNNCAFII 21 (30)
Q Consensus 3 ayelehissekknncafii 21 (30)
.+|||..||||-..-.||-
T Consensus 36 gfeleftssekltqgkfin 54 (83)
T 2ra1_A 36 GFELEFTSSEKLTQGKFIN 54 (83)
T ss_dssp SCEEEEEESSCCBTTTEEC
T ss_pred CCEEEEEECCEECCCCEEE
T ss_conf 6247985000011465688
No 2
>>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase; HET: AP5; 1.63A {Saccharomyces cerevisiae} (A:1-122,A:185-220)
Probab=8.66 E-value=1.3e+02 Score=14.45 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=15.6
Q ss_pred HHHHCCCCCCCEEEEEEEEEE
Q ss_conf 022101234653689873233
Q gi|254781168|r 6 LEHISSEKKNNCAFIIKGFCC 26 (30)
Q Consensus 6 lehissekknncafiikgfcc 26 (30)
.+.+.+....+..||+.||-.
T Consensus 73 ~~~l~~~~~~~~GfILDGFPr 93 (158)
T 1aky_A 73 KDELTNNPACKNGFILDGFPR 93 (158)
T ss_dssp HHHHHHCGGGGSCEEEESCCC
T ss_pred HHHHHCCHHHCCCEEECCCCC
T ss_conf 886533432136722316765
No 3
>>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} (A:1-51)
Probab=5.51 E-value=2e+02 Score=13.56 Aligned_cols=8 Identities=50% Similarity=1.282 Sum_probs=0.0
Q ss_pred EEEECCCC
Q ss_conf 32331789
Q gi|254781168|r 23 GFCCSSHG 30 (30)
Q Consensus 23 gfccsshg 30 (30)
|.|||..|
T Consensus 16 g~CCS~~G 23 (51)
T 2dkv_A 16 CLCCSRWG 23 (51)
T ss_dssp GCEECTTS
T ss_pred CCCCCCCC
T ss_conf 96437777
No 4
>>1dkc_A PAFP-S, antifungal peptide; three-strands beta sheet; NMR {Phytolacca americana} (A:)
Probab=5.44 E-value=1.6e+02 Score=14.01 Aligned_cols=5 Identities=80% Similarity=2.162 Sum_probs=0.0
Q ss_pred EEECC
Q ss_conf 23317
Q gi|254781168|r 24 FCCSS 28 (30)
Q Consensus 24 fccss 28 (30)
||||+
T Consensus 18 yccsg 22 (38)
T 1dkc_A 18 YCCSS 22 (38)
T ss_dssp CCSSS
T ss_pred CEECH
T ss_conf 30033
No 5
>>1wmt_A ISTX; neurotoxin, potassium channel blocker, solution structure, alpha-K toxin family, scorpion toxin; NMR {Synthetic} (A:)
Probab=5.19 E-value=1.6e+02 Score=14.08 Aligned_cols=7 Identities=86% Similarity=1.251 Sum_probs=0.0
Q ss_pred CCCCCEE
Q ss_conf 2346536
Q gi|254781168|r 12 EKKNNCA 18 (30)
Q Consensus 12 ekknnca 18 (30)
|||-|||
T Consensus 18 ekkynca 24 (41)
T 1wmt_A 18 EKKYNCA 24 (41)
T ss_dssp HHTTSCC
T ss_pred HHHHCHH
T ss_conf 8753558
No 6
>>1fyb_A Na-propi, proteinase inhibitor; two-domain protein, hydrolase inhibitor; NMR {Nicotiana alata} (A:1-60)
Probab=5.06 E-value=2.2e+02 Score=13.36 Aligned_cols=15 Identities=47% Similarity=0.576 Sum_probs=0.0
Q ss_pred CEEEHHHHCCCCCCC
Q ss_conf 402202210123465
Q gi|254781168|r 2 LAYELEHISSEKKNN 16 (30)
Q Consensus 2 layelehissekknn 16 (30)
+||..--.|.|||||
T Consensus 45 Iay~~Cp~se~kkn~ 59 (60)
T 1fyb_A 45 IAYGVCPRSEEKKND 59 (60)
T ss_dssp EEEEECCCSCSSSSS
T ss_pred EEEEECCCCHHHCCC
T ss_conf 054205763322267
No 7
>>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} (A:212-377)
Probab=4.85 E-value=3.2e+02 Score=12.57 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=0.0
Q ss_pred EEHHHHCCCCCCCEEEEEEEEEECC
Q ss_conf 2202210123465368987323317
Q gi|254781168|r 4 YELEHISSEKKNNCAFIIKGFCCSS 28 (30)
Q Consensus 4 yelehissekknncafiikgfccss 28 (30)
+||-|+-|+....-.-+.. ||||+
T Consensus 116 wEliH~kS~~egRpE~vf~-lc~st 139 (166)
T 1foe_A 116 CEIVHVKSESEGRPERVFH-LCCSS 139 (166)
T ss_dssp EEEEECCBTGGGBCCEEEE-EEESS
T ss_pred CEEEEECCCCCCCCCEEEE-EECCC
T ss_conf 2135310013688862899-98899
No 8
>>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain, chitin-binding, wheat GERM agglutinin, carbohydrate-binding protein; HET: GOL NDG NAG; 1.4A {Triticum aestivum} PDB: 1wgc_A* 2cwg_A* 2uwg_A* 7wga_A 9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 1t0w_A* (A:50-91)
Probab=4.80 E-value=2.3e+02 Score=13.28 Aligned_cols=8 Identities=50% Similarity=1.149 Sum_probs=0.0
Q ss_pred EEEECCCC
Q ss_conf 32331789
Q gi|254781168|r 23 GFCCSSHG 30 (30)
Q Consensus 23 gfccsshg 30 (30)
|.|||..|
T Consensus 9 g~CCS~~G 16 (42)
T 2uvo_A 9 NQCCSQYG 16 (42)
T ss_dssp TCEECTTS
T ss_pred CCEECCCC
T ss_conf 87468998
No 9
>>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} (A:57-105)
Probab=4.66 E-value=2.6e+02 Score=12.97 Aligned_cols=7 Identities=71% Similarity=1.398 Sum_probs=0.0
Q ss_pred EEECCCC
Q ss_conf 2331789
Q gi|254781168|r 24 FCCSSHG 30 (30)
Q Consensus 24 fccsshg 30 (30)
||-||.|
T Consensus 36 FCSSS~~ 42 (49)
T 1n1i_A 36 FCSSSSG 42 (49)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
T ss_conf 8689889
No 10
>>1zjq_A Jingzhaotoxin-VII; inhibitor cystine knot motif; NMR {Chilobrachys jingzhao} PDB: 2aap_A (A:)
Probab=4.37 E-value=2e+02 Score=13.57 Aligned_cols=4 Identities=100% Similarity=2.676 Sum_probs=0.0
Q ss_pred EEEC
Q ss_conf 2331
Q gi|254781168|r 24 FCCS 27 (30)
Q Consensus 24 fccs 27 (30)
||||
T Consensus 15 fccs 18 (34)
T 1zjq_A 15 FCCS 18 (34)
T ss_dssp CCSS
T ss_pred EECC
T ss_conf 7706
Done!