Query gi|254781168|ref|YP_003065581.1| hypothetical protein CLIBASIA_05375 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 30 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed Jun 1 01:35:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781168.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3gjx_B Snurportin-1; transport 5.5 1.1E+02 0.0045 14.1 0.0 10 4-13 339-348 (365) 2 3k1l_B Fancl; UBC, ring, RWD, 4.6 2.3E+02 0.0099 12.5 1.7 19 9-27 18-36 (381) 3 2rhk_C Cleavage and polyadenyl 4.4 46 0.0019 15.9 -2.5 19 7-25 9-27 (72) 4 1h9h_I EETI-II, trypsin inhibi 3.8 2.1E+02 0.0088 12.7 0.5 18 12-29 14-31 (36) 5 1p9g_A EAFP 2; antifungal pept 3.0 2.8E+02 0.012 12.1 0.5 8 23-30 14-21 (41) 6 1y3j_A Copper-transporting ATP 2.8 3.2E+02 0.014 11.8 0.5 15 14-28 2-16 (77) 7 1dkc_A PAFP-S, antifungal pept 2.7 2.7E+02 0.011 12.2 0.1 5 24-28 18-22 (38) 8 1gl4_A Nidogen-1, entactin; im 2.6 3.4E+02 0.014 11.7 0.5 4 23-26 27-30 (285) 9 3gxb_A VON willebrand factor; 2.4 98 0.0041 14.3 -2.5 10 20-29 170-179 (184) 10 1tul_A TLP20; telokin-like pro 2.3 4.2E+02 0.018 11.3 1.6 10 13-22 96-105 (108) No 1 >3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3gb8_B 2qna_B Probab=5.50 E-value=1.1e+02 Score=14.10 Aligned_cols=10 Identities=70% Similarity=1.139 Sum_probs=4.7 Q ss_pred EEHHHHCCCC Q ss_conf 2202210123 Q gi|254781168|r 4 YELEHISSEK 13 (30) Q Consensus 4 yelehissek 13 (30) |||||.|+.| T Consensus 339 ~~~~~~~~~~ 348 (365) T 3gjx_B 339 YELEHLSTPK 348 (365) T ss_dssp ---------- T ss_pred EEEEECCCCC T ss_conf 3533326798 No 2 >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Probab=4.63 E-value=2.3e+02 Score=12.49 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=14.6 Q ss_pred HCCCCCCCEEEEEEEEEEC Q ss_conf 1012346536898732331 Q gi|254781168|r 9 ISSEKKNNCAFIIKGFCCS 27 (30) Q Consensus 9 issekknncafiikgfccs 27 (30) .-+++++|.+.+|+||-.+ T Consensus 18 l~~~~~~~~~~~~~G~i~~ 36 (381) T 3k1l_B 18 LAAELQPSGACIIRGVLGS 36 (381) T ss_dssp EEEEECTTSCEEEEEEEEE T ss_pred CEEECCCCCCEEEEEEEEE T ss_conf 1265068972799779995 No 3 >2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Probab=4.43 E-value=46 Score=15.86 Aligned_cols=19 Identities=37% Similarity=0.852 Sum_probs=12.9 Q ss_pred HHHCCCCCCCEEEEEEEEE Q ss_conf 2210123465368987323 Q gi|254781168|r 7 EHISSEKKNNCAFIIKGFC 25 (30) Q Consensus 7 ehissekknncafiikgfc 25 (30) .|++.+|.--|-|.++|.| T Consensus 9 sh~~~~kt~iC~~f~~G~C 27 (72) T 2rhk_C 9 SHMSGEKTVVCKHWLRGLC 27 (72) T ss_dssp CSSSCCCCSBCHHHHTTCC T ss_pred CCCCCCCCEECCHHHHCCC T ss_conf 5548998766902402959 No 4 >1h9h_I EETI-II, trypsin inhibitor II; hydrolase inhibitor, complex (serine protease/inhibitor), squash inhibitor, cystine knot, hydrolase; 1.5A {Ecballium elaterium} SCOP: g.3.2.1 PDB: 1mcv_I Probab=3.82 E-value=2.1e+02 Score=12.72 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=11.2 Q ss_pred CCCCCEEEEEEEEEECCC Q ss_conf 234653689873233178 Q gi|254781168|r 12 EKKNNCAFIIKGFCCSSH 29 (30) Q Consensus 12 ekknncafiikgfccssh 29 (30) .--..|.---.|||-|.| T Consensus 14 dclagcvcgpngfcgsph 31 (36) T 1h9h_I 14 DCLAGCVCGPNGFCGSPH 31 (36) T ss_dssp GSCTTCEECTTSBEECC- T ss_pred CCCCEEEECCCCCCCCCC T ss_conf 314500525998458976 No 5 >1p9g_A EAFP 2; antifungal peptide, atomic resolution, antifungal protein; HET: PCA; 0.84A {Eucommia ulmoides} SCOP: g.3.1.1 PDB: 1p9z_A* Probab=3.00 E-value=2.8e+02 Score=12.10 Aligned_cols=8 Identities=63% Similarity=1.514 Sum_probs=0.0 Q ss_pred EEEECCCC Q ss_conf 32331789 Q gi|254781168|r 23 GFCCSSHG 30 (30) Q Consensus 23 gfccsshg 30 (30) |.|||--| T Consensus 14 glccsiyg 21 (41) T 1p9g_A 14 GLCCSIYG 21 (41) T ss_dssp TCEEETTS T ss_pred CEEEEEEE T ss_conf 51577862 No 6 >1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A Probab=2.75 E-value=3.2e+02 Score=11.83 Aligned_cols=15 Identities=27% Similarity=0.798 Sum_probs=0.0 Q ss_pred CCCEEEEEEEEEECC Q ss_conf 465368987323317 Q gi|254781168|r 14 KNNCAFIIKGFCCSS 28 (30) Q Consensus 14 knncafiikgfccss 28 (30) .+.+-|-|.|..|.+ T Consensus 2 s~~~~l~V~Gm~C~~ 16 (77) T 1y3j_A 2 SSKCYIQVTGMTCAS 16 (77) T ss_dssp CEEEEEEESCGGGCS T ss_pred CCEEEEEECCCCCHH T ss_conf 966999989814389 No 7 >1dkc_A PAFP-S, antifungal peptide; three-strands beta sheet, antifungal protein; NMR {Phytolacca americana} SCOP: g.3.4.2 Probab=2.70 E-value=2.7e+02 Score=12.22 Aligned_cols=5 Identities=80% Similarity=2.162 Sum_probs=0.0 Q ss_pred EEECC Q ss_conf 23317 Q gi|254781168|r 24 FCCSS 28 (30) Q Consensus 24 fccss 28 (30) +|||+ T Consensus 18 yccs~ 22 (38) T 1dkc_A 18 YCCSS 22 (38) T ss_dssp CCSSS T ss_pred CEECH T ss_conf 20123 No 8 >1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A Probab=2.59 E-value=3.4e+02 Score=11.71 Aligned_cols=4 Identities=100% Similarity=3.042 Sum_probs=0.0 Q ss_pred EEEE Q ss_conf 3233 Q gi|254781168|r 23 GFCC 26 (30) Q Consensus 23 gfcc 26 (30) |||| T Consensus 27 G~CC 30 (285) T 1gl4_A 27 GFCC 30 (285) T ss_dssp CEEE T ss_pred EEEE T ss_conf 5204 No 9 >3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens} Probab=2.36 E-value=98 Score=14.31 Aligned_cols=10 Identities=40% Similarity=1.039 Sum_probs=0.0 Q ss_pred EEEEEEECCC Q ss_conf 9873233178 Q gi|254781168|r 20 IIKGFCCSSH 29 (30) Q Consensus 20 iikgfccssh 29 (30) +++..|||.| T Consensus 170 l~~~~cc~p~ 179 (184) T 3gxb_A 170 LVLQRCCSPH 179 (184) T ss_dssp HHHHHHCC-- T ss_pred HHHHHCCCCC T ss_conf 9975469997 No 10 >1tul_A TLP20; telokin-like protein; 2.20A {Autographa californicanucleopolyhedrovirus} SCOP: b.85.5.1 Probab=2.26 E-value=4.2e+02 Score=11.26 Aligned_cols=10 Identities=30% Similarity=0.358 Sum_probs=0.0 Q ss_pred CCCCEEEEEE Q ss_conf 3465368987 Q gi|254781168|r 13 KKNNCAFIIK 22 (30) Q Consensus 13 kknncafiik 22 (30) ||+.|-|-|+ T Consensus 96 kk~~~iFki~ 105 (108) T 1tul_A 96 NKGQMLFQTK 105 (108) T ss_dssp CTTCEEEEEE T ss_pred ECCCEEEEEE T ss_conf 6176799999 Done!