Query gi|254781168|ref|YP_003065581.1| hypothetical protein CLIBASIA_05375 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 30
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:35:59 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781168.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gjx_B Snurportin-1; transport 5.5 1.1E+02 0.0045 14.1 0.0 10 4-13 339-348 (365)
2 3k1l_B Fancl; UBC, ring, RWD, 4.6 2.3E+02 0.0099 12.5 1.7 19 9-27 18-36 (381)
3 2rhk_C Cleavage and polyadenyl 4.4 46 0.0019 15.9 -2.5 19 7-25 9-27 (72)
4 1h9h_I EETI-II, trypsin inhibi 3.8 2.1E+02 0.0088 12.7 0.5 18 12-29 14-31 (36)
5 1p9g_A EAFP 2; antifungal pept 3.0 2.8E+02 0.012 12.1 0.5 8 23-30 14-21 (41)
6 1y3j_A Copper-transporting ATP 2.8 3.2E+02 0.014 11.8 0.5 15 14-28 2-16 (77)
7 1dkc_A PAFP-S, antifungal pept 2.7 2.7E+02 0.011 12.2 0.1 5 24-28 18-22 (38)
8 1gl4_A Nidogen-1, entactin; im 2.6 3.4E+02 0.014 11.7 0.5 4 23-26 27-30 (285)
9 3gxb_A VON willebrand factor; 2.4 98 0.0041 14.3 -2.5 10 20-29 170-179 (184)
10 1tul_A TLP20; telokin-like pro 2.3 4.2E+02 0.018 11.3 1.6 10 13-22 96-105 (108)
No 1
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3gb8_B 2qna_B
Probab=5.50 E-value=1.1e+02 Score=14.10 Aligned_cols=10 Identities=70% Similarity=1.139 Sum_probs=4.7
Q ss_pred EEHHHHCCCC
Q ss_conf 2202210123
Q gi|254781168|r 4 YELEHISSEK 13 (30)
Q Consensus 4 yelehissek 13 (30)
|||||.|+.|
T Consensus 339 ~~~~~~~~~~ 348 (365)
T 3gjx_B 339 YELEHLSTPK 348 (365)
T ss_dssp ----------
T ss_pred EEEEECCCCC
T ss_conf 3533326798
No 2
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=4.63 E-value=2.3e+02 Score=12.49 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=14.6
Q ss_pred HCCCCCCCEEEEEEEEEEC
Q ss_conf 1012346536898732331
Q gi|254781168|r 9 ISSEKKNNCAFIIKGFCCS 27 (30)
Q Consensus 9 issekknncafiikgfccs 27 (30)
.-+++++|.+.+|+||-.+
T Consensus 18 l~~~~~~~~~~~~~G~i~~ 36 (381)
T 3k1l_B 18 LAAELQPSGACIIRGVLGS 36 (381)
T ss_dssp EEEEECTTSCEEEEEEEEE
T ss_pred CEEECCCCCCEEEEEEEEE
T ss_conf 1265068972799779995
No 3
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=4.43 E-value=46 Score=15.86 Aligned_cols=19 Identities=37% Similarity=0.852 Sum_probs=12.9
Q ss_pred HHHCCCCCCCEEEEEEEEE
Q ss_conf 2210123465368987323
Q gi|254781168|r 7 EHISSEKKNNCAFIIKGFC 25 (30)
Q Consensus 7 ehissekknncafiikgfc 25 (30)
.|++.+|.--|-|.++|.|
T Consensus 9 sh~~~~kt~iC~~f~~G~C 27 (72)
T 2rhk_C 9 SHMSGEKTVVCKHWLRGLC 27 (72)
T ss_dssp CSSSCCCCSBCHHHHTTCC
T ss_pred CCCCCCCCEECCHHHHCCC
T ss_conf 5548998766902402959
No 4
>1h9h_I EETI-II, trypsin inhibitor II; hydrolase inhibitor, complex (serine protease/inhibitor), squash inhibitor, cystine knot, hydrolase; 1.5A {Ecballium elaterium} SCOP: g.3.2.1 PDB: 1mcv_I
Probab=3.82 E-value=2.1e+02 Score=12.72 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=11.2
Q ss_pred CCCCCEEEEEEEEEECCC
Q ss_conf 234653689873233178
Q gi|254781168|r 12 EKKNNCAFIIKGFCCSSH 29 (30)
Q Consensus 12 ekknncafiikgfccssh 29 (30)
.--..|.---.|||-|.|
T Consensus 14 dclagcvcgpngfcgsph 31 (36)
T 1h9h_I 14 DCLAGCVCGPNGFCGSPH 31 (36)
T ss_dssp GSCTTCEECTTSBEECC-
T ss_pred CCCCEEEECCCCCCCCCC
T ss_conf 314500525998458976
No 5
>1p9g_A EAFP 2; antifungal peptide, atomic resolution, antifungal protein; HET: PCA; 0.84A {Eucommia ulmoides} SCOP: g.3.1.1 PDB: 1p9z_A*
Probab=3.00 E-value=2.8e+02 Score=12.10 Aligned_cols=8 Identities=63% Similarity=1.514 Sum_probs=0.0
Q ss_pred EEEECCCC
Q ss_conf 32331789
Q gi|254781168|r 23 GFCCSSHG 30 (30)
Q Consensus 23 gfccsshg 30 (30)
|.|||--|
T Consensus 14 glccsiyg 21 (41)
T 1p9g_A 14 GLCCSIYG 21 (41)
T ss_dssp TCEEETTS
T ss_pred CEEEEEEE
T ss_conf 51577862
No 6
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=2.75 E-value=3.2e+02 Score=11.83 Aligned_cols=15 Identities=27% Similarity=0.798 Sum_probs=0.0
Q ss_pred CCCEEEEEEEEEECC
Q ss_conf 465368987323317
Q gi|254781168|r 14 KNNCAFIIKGFCCSS 28 (30)
Q Consensus 14 knncafiikgfccss 28 (30)
.+.+-|-|.|..|.+
T Consensus 2 s~~~~l~V~Gm~C~~ 16 (77)
T 1y3j_A 2 SSKCYIQVTGMTCAS 16 (77)
T ss_dssp CEEEEEEESCGGGCS
T ss_pred CCEEEEEECCCCCHH
T ss_conf 966999989814389
No 7
>1dkc_A PAFP-S, antifungal peptide; three-strands beta sheet, antifungal protein; NMR {Phytolacca americana} SCOP: g.3.4.2
Probab=2.70 E-value=2.7e+02 Score=12.22 Aligned_cols=5 Identities=80% Similarity=2.162 Sum_probs=0.0
Q ss_pred EEECC
Q ss_conf 23317
Q gi|254781168|r 24 FCCSS 28 (30)
Q Consensus 24 fccss 28 (30)
+|||+
T Consensus 18 yccs~ 22 (38)
T 1dkc_A 18 YCCSS 22 (38)
T ss_dssp CCSSS
T ss_pred CEECH
T ss_conf 20123
No 8
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=2.59 E-value=3.4e+02 Score=11.71 Aligned_cols=4 Identities=100% Similarity=3.042 Sum_probs=0.0
Q ss_pred EEEE
Q ss_conf 3233
Q gi|254781168|r 23 GFCC 26 (30)
Q Consensus 23 gfcc 26 (30)
||||
T Consensus 27 G~CC 30 (285)
T 1gl4_A 27 GFCC 30 (285)
T ss_dssp CEEE
T ss_pred EEEE
T ss_conf 5204
No 9
>3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens}
Probab=2.36 E-value=98 Score=14.31 Aligned_cols=10 Identities=40% Similarity=1.039 Sum_probs=0.0
Q ss_pred EEEEEEECCC
Q ss_conf 9873233178
Q gi|254781168|r 20 IIKGFCCSSH 29 (30)
Q Consensus 20 iikgfccssh 29 (30)
+++..|||.|
T Consensus 170 l~~~~cc~p~ 179 (184)
T 3gxb_A 170 LVLQRCCSPH 179 (184)
T ss_dssp HHHHHHCC--
T ss_pred HHHHHCCCCC
T ss_conf 9975469997
No 10
>1tul_A TLP20; telokin-like protein; 2.20A {Autographa californicanucleopolyhedrovirus} SCOP: b.85.5.1
Probab=2.26 E-value=4.2e+02 Score=11.26 Aligned_cols=10 Identities=30% Similarity=0.358 Sum_probs=0.0
Q ss_pred CCCCEEEEEE
Q ss_conf 3465368987
Q gi|254781168|r 13 KKNNCAFIIK 22 (30)
Q Consensus 13 kknncafiik 22 (30)
||+.|-|-|+
T Consensus 96 kk~~~iFki~ 105 (108)
T 1tul_A 96 NKGQMLFQTK 105 (108)
T ss_dssp CTTCEEEEEE
T ss_pred ECCCEEEEEE
T ss_conf 6176799999
Done!