HHsearch alignment for GI: 254781169 and conserved domain: COG3775
>COG3775 GatC Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].
Probab=99.18 E-value=2.5e-07 Score=67.91 Aligned_cols=358 Identities=15% Similarity=0.182 Sum_probs=239.5
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 92789999999998501251999999999999739989999999999999999986438889976888999999841880
Q gi|254781169|r 1 MVFFAHCFSFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGADILVKKSKAIITKISVIHHID 80 (461)
Q Consensus 1 M~~~~~i~~f~~~~il~~pailiGlia~iGlilqkK~~~~vi~GtiKt~iGflIl~~Gag~lv~~l~p~~~~~~~~f~~~ 80 (461)
T Consensus 1 m~~~~~v~~yiL~--LG~tV~lpivi~il~l-ifrvK~~kA~~~Gl~igIgfvGig~Vi~ll~~~~~paaqamve~~gin 77 (446)
T COG3775 1 MDTLSSVFQYILD--LGPTVMLPIVIIILAL-IFRVKPGKAFKAGLTIGIGFVGIGLVIGLLTDNLGPAAQAMVERTGIN 77 (446)
T ss_pred CHHHHHHHHHHHH--CCCHHHHHHHHHHHHH-HHCCCHHHHHHCCCEEEEEEEEHHHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf 9058899999886--3845879999999999-937868998742657874500089999999853489999999971987
Q ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 25258289999999985223227999999999999999997210587446872189999999999999850785159999
Q gi|254781169|r 81 GSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVIFRHLTGIRTIVLNGEVMFQQAGLIFIFFHTALNTEIWQSV 160 (461)
Q Consensus 81 gvv~~~~~~~~~a~~~~g~~~~~v~~~~li~f~~niil~~~aR~T~~K~IfLTGH~~~~~a~~~~vil~~~~~~~~~~~i 160 (461)
T Consensus 78 L~v~DvGW~~~s~-itWaS~--ia~~~ip~~i~vNv~ML~~-k~TkTldVDI---wN~WH~~~tg~lv~~~t--gS~~~a 148 (446)
T COG3775 78 LHVIDVGWPPLST-ITWASP--IALFFIPLIILVNVAMLVT-KKTKTLDVDI---WNYWHYAFTGALVYLVT--GSLIIA 148 (446)
T ss_pred EEEEECCCCCCCC-CHHHHH--HHHHHHHHHHHHHHHHHHH-HCCCCEEECH---HHHHHHHHHHHHHHHHH--HHHHHH
T ss_conf 4876158875444-002406--8999999999999999974-1234034107---98779999999999985--319999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH-HHHHHHHHHC----CCC--CCCHHHHCCCCHHHHHHHH
Q ss_conf 99999999999970687479999641898676760146999-9999997561----882--0073431288314687631
Q gi|254781169|r 161 AYSSCLLALYWGITSNLLYKPTQEITNNAGFSIGHQQQVAS-WIAYKIAPYL----GDR--SENINSLKLSKWLVLLNNY 233 (461)
Q Consensus 161 i~g~i~lG~y~~i~pal~~~~~~kiTg~d~~aiGH~~~~~~-~~a~~ig~~~----G~k--~~stE~iklPk~L~flrD~ 233 (461)
T Consensus 149 ~l~avi~~v~~lk~aDw~~p~v~d~~gl~gis~ptgs~~~~~pi~~~~dkii~KiPgl~k~~~Da~~i--qkk~G~fGep 226 (446)
T COG3775 149 LLAAVIHAVLVLKLADWTAPDVQDLFGLEGISIPTGSSANYMPIGMLLDKIIEKIPGLNKIDFDAETI--QKKFGIFGEP 226 (446)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCCCCCCHHHH--HHHHCCCCCH
T ss_conf 99999999999873200234589860999978776562011005652998997685864468999999--8662576662
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCC
Q ss_conf 5999999999999999844978998521887113887999999999999999877999998999989888764---6998
Q gi|254781169|r 234 VISTAIVMIFFWGIALLSLGIDTVQTMAGKTHWTLYILETGLLFAVGIAIIMQGVSMFVKELTSSFRGISTSL---IPGA 310 (461)
Q Consensus 234 ~vs~ai~M~i~f~i~~l~aG~~~v~~~~g~~n~~v~~i~q~l~Faagi~Ill~GVRmfi~EivpAFkGIseKl---iP~A 310 (461)
T Consensus 227 ~~-iG~ilG~~---iGilagy~~~~-----------vl~Lg~~~aavm~L~prmvk~lmegL~PlSe~a~~fl~krf~gR 291 (446)
T COG3775 227 MF-IGFILGLL---IGILAGYDVKK-----------VLQLGMTAAAVMVLFPRMVKILMEGLTPLSEGARKFLNKRFKGR 291 (446)
T ss_pred HH-HHHHHHHH---HHHHCCCCHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
T ss_conf 49-99999999---99971898999-----------99999899999999999999999623606689999998537996
Q ss_pred C--HHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHCC-CCCHHHHHHHHH
Q ss_conf 0--02007775085767689999999999999999999751279999656887-5375057654213-463889999999
Q gi|254781169|r 311 I--LAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPGFIPM-FFSNATIGIFANH-YGGWRAASKICF 386 (461)
Q Consensus 311 ~--PAlDcpv~F~yaPNAVliGFi~s~ig~li~~~il~~~~~pviIiPg~i~~-FF~gatagVfgNa-~GG~rgAiig~f 386 (461)
T Consensus 292 e~~IGLD~av~~Ghp~v-------is~--aliliPItli~---AviLPGN~VLPlgdl~~i~f~~a~~vv~~rGnliR~i 359 (446)
T COG3775 292 EFFIGLDWAVLLGHPAV-------IST--ALILIPITLIL---AVILPGNKVLPLGDLATIGFFVAMAVVTHRGNLIRTI 359 (446)
T ss_pred EEEEECCHHHHCCCHHH-------HHH--HHHHHHHHHHH---HHHCCCCCCCCCCCCHHHHHHHHHEEEECCCCCHHHH
T ss_conf 68861561776498699-------999--99999999998---8524798403555420334456640340377433899
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9989999999999
Q gi|254781169|r 387 VMGVIEILGSIWA 399 (461)
Q Consensus 387 v~Gii~~~~~a~~ 399 (461)
T Consensus 360 i~G~i~i~i~L~i 372 (446)
T COG3775 360 ISGIIVIPIFLWI 372 (446)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9748999999999