Query gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 461
No_of_seqs 130 out of 259
Neff 4.7
Searched_HMMs 33803
Date Wed Jun 1 22:42:36 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781169.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3hzq_A Large-conductance mech 34.7 22 0.00065 14.2 1.9 14 379-392 15-28 (82)
2 >2oem_A 2,3-diketo-5-methylthi 33.2 16 0.00046 15.2 0.9 37 191-227 75-116 (119)
3 >3fk4_A Rubisco-like protein; 33.2 13 0.0004 15.7 0.6 31 197-227 87-117 (121)
4 >2oar_A Large-conductance mech 28.0 30 0.00089 13.3 2.6 21 377-397 48-68 (126)
5 >2kbv_A Sodium/hydrogen exchan 23.6 26 0.00077 13.7 0.6 15 371-385 5-19 (28)
6 >2d69_A Ribulose bisphosphate 23.3 28 0.00082 13.5 0.7 31 197-227 96-129 (133)
7 >3lge_E Sorting nexin-9; compl 17.8 30 0.00089 13.3 -0.0 27 207-233 4-30 (31)
8 >2z3x_A SAsp, small, acid-solu 17.5 17 0.00049 15.0 -1.4 12 304-315 2-13 (63)
9 >3ixz_A Potassium-transporting 16.1 52 0.0015 11.7 3.5 46 214-259 66-111 (124)
10 >1bh9_B TAFII28; histone fold, 15.8 53 0.0016 11.6 4.3 28 279-306 19-47 (72)
No 1
>>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp} (A:33-114)
Probab=34.72 E-value=22 Score=14.20 Aligned_cols=14 Identities=14% Similarity=0.005 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89999999998999
Q gi|254781169|r 379 RAASKICFVMGVIE 392 (461)
Q Consensus 379 rgAiig~fv~Gii~ 392 (461)
=++++-|+++.++.
T Consensus 15 F~~iV~slv~~iI~ 28 (82)
T 3hzq_A 15 FNKIICSLVENIIM 28 (82)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999899
No 2
>>2oem_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; rubisco-like protein, isomerase; HET: KCX 1AE; 1.70A {Geobacillus kaustophilus} PDB: 2oel_A* 2oek_A* 2oej_A (A:1-119)
Probab=33.22 E-value=16 Score=15.22 Aligned_cols=37 Identities=8% Similarity=0.063 Sum_probs=30.2
Q ss_pred EEEEEH-----HHHHHHHHHHHHHHCCCCCCCHHHHCCCCHH
Q ss_conf 767601-----4699999999975618820073431288314
Q gi|254781169|r 191 FSIGHQ-----QQVASWIAYKIAPYLGDRSENINSLKLSKWL 227 (461)
Q Consensus 191 ~aiGH~-----~~~~~~~a~~ig~~~G~k~~stE~iklPk~L 227 (461)
..+++. ..+...++...|+.++.+.-..+|+.+|+.+
T Consensus 75 v~IayP~~n~~~~lp~llt~i~GN~s~~~~irL~Di~lP~~~ 116 (119)
T 2oem_A 75 VKIAYPTVNFSADLPALLVTTFGKLSLDGEVRLLDLEFPDEW 116 (119)
T ss_dssp EEEEEEGGGSCSSHHHHHHHHHSGGGGSSSEEEEEEECCHHH
T ss_pred EEEECCHHHCCCCHHHHHHHHHCCHHHCCCEEEEEEECCHHH
T ss_conf 999716675165478899998085310477479986389999
No 3
>>3fk4_A Rubisco-like protein; structural genomics, target 9463A, PSI-2, protein structure initiative; 2.00A {Bacillus cereus atcc 14579} (A:1-121)
Probab=33.20 E-value=13 Score=15.65 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHCCCCHH
Q ss_conf 4699999999975618820073431288314
Q gi|254781169|r 197 QQVASWIAYKIAPYLGDRSENINSLKLSKWL 227 (461)
Q Consensus 197 ~~~~~~~a~~ig~~~G~k~~stE~iklPk~L 227 (461)
+.+...++..+|+.++.+.-..+|+.+|+.+
T Consensus 87 ~~l~~llt~i~GN~s~~~~irL~Di~lP~~~ 117 (121)
T 3fk4_A 87 PDLPAILTTTFGKLSLDGEVKLIDLTFSDEL 117 (121)
T ss_dssp SSHHHHHHHHHTTGGGSSSEEEEEEEECHHH
T ss_pred CCHHHHHHHHCCCHHHCCCEEEEEEECCHHH
T ss_conf 6577799985286321477379987189999
No 4
>>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} (A:1-126)
Probab=28.01 E-value=30 Score=13.28 Aligned_cols=21 Identities=19% Similarity=-0.081 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 388999999999899999999
Q gi|254781169|r 377 GWRAASKICFVMGVIEILGSI 397 (461)
Q Consensus 377 G~rgAiig~fv~Gii~~~~~a 397 (461)
+-=++++-|+++.++.-....
T Consensus 48 ~AF~~iV~slV~diImPlI~~ 68 (126)
T 2oar_A 48 TAFTALVTKFTDSIITPLINR 68 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHH
T ss_conf 999999999998743332442
No 5
>>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic} (A:)
Probab=23.63 E-value=26 Score=13.71 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=9.9
Q ss_pred HHCCCCCHHHHHHHH
Q ss_conf 421346388999999
Q gi|254781169|r 371 FANHYGGWRAASKIC 385 (461)
Q Consensus 371 fgNa~GG~rgAiig~ 385 (461)
|=-+.||.|||+.-|
T Consensus 5 fiiaygglrgaiafs 19 (28)
T 2kbv_A 5 FIIAYGGLRGAIAFS 19 (28)
T ss_dssp HHTTTTSSCHHHHHH
T ss_pred EEEEECCCCHHHHEE
T ss_conf 999946732312100
No 6
>>2d69_A Ribulose bisphosphate carboxylase; alpha/beta barrel, structural genomics, NPPSFA; 1.90A {Pyrococcus horikoshii OT3} (A:1-133)
Probab=23.26 E-value=28 Score=13.52 Aligned_cols=31 Identities=3% Similarity=-0.019 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHCCCCCC---CHHHHCCCCHH
Q ss_conf 46999999999756188200---73431288314
Q gi|254781169|r 197 QQVASWIAYKIAPYLGDRSE---NINSLKLSKWL 227 (461)
Q Consensus 197 ~~~~~~~a~~ig~~~G~k~~---stE~iklPk~L 227 (461)
+++...+++.+|..||=|.- ..||+.+|+..
T Consensus 96 gsi~nlltsivGNvfG~kav~aLRLeD~r~P~ay 129 (133)
T 2d69_A 96 GSLVQLFSAVAGNVFGMKALKNLRLLDFHPPYEY 129 (133)
T ss_dssp TCHHHHHHHHTTGGGGCTTEEEEEEEEEECCHHH
T ss_pred CCHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHH
T ss_conf 8688999999862566543223689504599999
No 7
>>3lge_E Sorting nexin-9; complex, glycolysis, actin dynamics, LC4, hydrophobic pocket, acetylation, lyase, phosphoprotein, schiff base; 2.20A {Oryctolagus cuniculus} (E:)
Probab=17.84 E-value=30 Score=13.29 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=22.4
Q ss_pred HHHHCCCCCCCHHHHCCCCHHHHHHHH
Q ss_conf 975618820073431288314687631
Q gi|254781169|r 207 IAPYLGDRSENINSLKLSKWLVLLNNY 233 (461)
Q Consensus 207 ig~~~G~k~~stE~iklPk~L~flrD~ 233 (461)
-|+..|+.++=-||-.=||+-|.|+|+
T Consensus 4 qgpatgddddwdedwdgpksssyfkds 30 (31)
T 3lge_E 4 QGPATGDDDDWDEDWDGPKSSSYFKDS 30 (31)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 577767654430126786442420257
No 8
>>2z3x_A SAsp, small, acid-soluble spore protein C; alpha/beta-type SAsp, bacillus subtils spore; 2.10A {Bacillus subtilis} (A:)
Probab=17.48 E-value=17 Score=15.00 Aligned_cols=12 Identities=50% Similarity=0.589 Sum_probs=6.9
Q ss_pred HHHCCCCCHHCC
Q ss_conf 764699800200
Q gi|254781169|r 304 TSLIPGAILAID 315 (461)
Q Consensus 304 eKliP~A~PAlD 315 (461)
..+||.|+.|+|
T Consensus 2 k~lVPeA~~aL~ 13 (63)
T 2z3x_A 2 KLLIPQAASAIE 13 (63)
T ss_dssp CCSSGGGHHHHH
T ss_pred CCCCHHHHHHHH
T ss_conf 755577999999
No 9
>>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A (A:99-168,A:290-343)
Probab=16.08 E-value=52 Score=11.68 Aligned_cols=46 Identities=11% Similarity=0.126 Sum_probs=32.5
Q ss_pred CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 2007343128831468763159999999999999998449789985
Q gi|254781169|r 214 RSENINSLKLSKWLVLLNNYVISTAIVMIFFWGIALLSLGIDTVQT 259 (461)
Q Consensus 214 k~~stE~iklPk~L~flrD~~vs~ai~M~i~f~i~~l~aG~~~v~~ 259 (461)
.||+.|+--+-+.++-|-+.....++.+..++.++.+.-|.+..+.
T Consensus 66 Aeka~~~TPLq~~l~~~~~~l~~~a~~~~~~~f~~~~~~g~~~~~~ 111 (124)
T 3ixz_A 66 STNIIEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMCIGYTFLRA 111 (124)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999957878999999999999999999999876333135317899
No 10
>>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} (B:18-89)
Probab=15.83 E-value=53 Score=11.64 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=19.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 9999999877-999998999989888764
Q gi|254781169|r 279 VGIAIIMQGV-SMFVKELTSSFRGISTSL 306 (461)
Q Consensus 279 agi~Ill~GV-Rmfi~EivpAFkGIseKl 306 (461)
..+.|.+.|+ .+|++||+.-=+-+.|+.
T Consensus 19 ~nv~i~v~GiaKvFvGEiVE~A~~V~~~~ 47 (72)
T 1bh9_B 19 QNVVIAMSGISKVFVGEVVEEALDVCEKW 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 13999999999999999999999999965
Done!