RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system
enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62]
         (461 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.1 bits (83), Expect = 0.017
 Identities = 55/314 (17%), Positives = 99/314 (31%), Gaps = 115/314 (36%)

Query: 155 EIWQSVAYSSCLLALYWGITSNLLYKPTQEITNNAGFSIGHQQQVASWIAYKIA-P---Y 210
           +++Q+  Y   L+      ++  L +  +  T +A         +  W+      P   Y
Sbjct: 175 DLYQT--YHV-LVGDLIKFSAETLSELIRT-TLDAEKVFTQGLNILEWLENPSNTPDKDY 230

Query: 211 LGDRSENINSLKLSKWLVLLNNYVISTAIVM--------IFFWGIALLSLGIDTVQTMAG 262
           L   S  I S  L   ++ L +YV+ TA ++         +  G    S G+ T   +A 
Sbjct: 231 LL--SIPI-SCPLIG-VIQLAHYVV-TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285

Query: 263 KTHWTLYI------LETGLLFAVGI-------------AIIM------QGV--SMF-VKE 294
              W  +       +   +LF +G+             +I+       +GV   M  +  
Sbjct: 286 TDSWESFFVSVRKAIT--VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343

Query: 295 LTSSF---------------RGISTSLIPGA---ILAIDCSAIYGF--------APNALI 328
           LT                  + +  SL+ GA   +++    ++YG         AP+ L 
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL- 402

Query: 329 WGFIWGAIGQISTI--------LVMLF------FHSPILIVPGFIPMFFSNATIGI---F 371
                    Q S I            F      FHS +L            A+  I    
Sbjct: 403 --------DQ-SRIPFSERKLKFSNRFLPVASPFHSHLL----------VPASDLINKDL 443

Query: 372 ANHYGGWRAAS-KI 384
             +   + A   +I
Sbjct: 444 VKNNVSFNAKDIQI 457



 Score = 29.1 bits (65), Expect = 2.0
 Identities = 30/156 (19%), Positives = 47/156 (30%), Gaps = 70/156 (44%)

Query: 4   FAHCF----SFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGA 59
           F++ F    S FHS +L   +                            I       +  
Sbjct: 416 FSNRFLPVASPFHSHLLVPAS--------------------------DLI----NKDLVK 445

Query: 60  DILVKKSKAIITKISVIHHIDG--------SIIDPYVFMFSCITSLGDKY----NFVGYT 107
           + +   +K I  +I V    DG        SI +    +  CI  L  K+     F   T
Sbjct: 446 NNVSFNAKDI--QIPVYDTFDGSDLRVLSGSISER---IVDCIIRLPVKWETTTQF-KAT 499

Query: 108 VLIAF----------LLNILMVIFRHL--TGIRTIV 131
            ++ F          L +      R+   TG+R IV
Sbjct: 500 HILDFGPGGASGLGVLTH------RNKDGTGVRVIV 529


>3k07_A Cation efflux system protein CUSA; transmembrane helix, cell inner
           membrane, cell membrane, COP transport, ION transport,
           membrane; 3.52A {Escherichia coli k-12} PDB: 3kso_A
           3kss_A
          Length = 1055

 Score = 30.9 bits (69), Expect = 0.61
 Identities = 25/231 (10%), Positives = 60/231 (25%), Gaps = 1/231 (0%)

Query: 213 DRSENINSLKLSKWLVLLNNYVISTAIVMIFFWGIALLSLGIDTVQTMAGKTHWTLYILE 272
           DRS+ I+    +    LL  +++   +  +F W +    + I ++          ++   
Sbjct: 334 DRSQLIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQG 393

Query: 273 TGLLFAVGIAIIMQGVSMFVKELTSSFRGISTSLIPGAILAIDCSAIYGFAPNALIWGFI 332
                     I +  V   V             L        D +         +    +
Sbjct: 394 LNANIMSLGGIAI-AVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASV 452

Query: 333 WGAIGQISTILVMLFFHSPILIVPGFIPMFFSNATIGIFANHYGGWRAASKICFVMGVIE 392
                   ++L++     PI  + G     F            G    A  +  ++    
Sbjct: 453 EVGPALFISLLIITLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYW 512

Query: 393 ILGSIWAIQLAKTDSWMGMADWSLIAPLIMQGFKLTHFFIIPIGLLSVIYM 443
           I G I        + ++      L+  ++           + +  +     
Sbjct: 513 IRGKIPPESSNPLNRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLN 563


>2g0t_A Conserved hypothetical protein; TM0796, structural genomics, PSI,
           protein structure initiative, joint center for
           structural genomics, JCSG; 2.67A {Thermotoga maritima}
           SCOP: c.37.1.10
          Length = 350

 Score = 28.6 bits (64), Expect = 2.7
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 300 RGISTSLIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPG-- 357
           +GI    +      I   A  G+  +A+   F+ G + +   +L +      I+ V G  
Sbjct: 197 KGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKA--VLKLEKTGKEIVFVEGQG 254

Query: 358 -FIPMFFSNATIGI 370
                 +   T+G+
Sbjct: 255 ALRHPAYGQVTLGL 268


>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
           aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
           radiodurans}
          Length = 851

 Score = 27.7 bits (61), Expect = 5.7
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 197 QQVASWIAYKIAPYLGDRSENINSLKLSKWLVLLNNYVISTAI 239
            QVASW   ++   L      + +  L+     + +  +S  I
Sbjct: 721 AQVASWTVNELVAGLRAGEVKVRAADLAPLAEGVASGQLSARI 763


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.330    0.142    0.442 

Gapped
Lambda     K      H
   0.267   0.0455    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,869,033
Number of extensions: 172439
Number of successful extensions: 543
Number of sequences better than 10.0: 1
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 58
Length of query: 461
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 365
Effective length of database: 3,365,806
Effective search space: 1228519190
Effective search space used: 1228519190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.8 bits)