RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62] (461 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 36.1 bits (83), Expect = 0.017 Identities = 55/314 (17%), Positives = 99/314 (31%), Gaps = 115/314 (36%) Query: 155 EIWQSVAYSSCLLALYWGITSNLLYKPTQEITNNAGFSIGHQQQVASWIAYKIA-P---Y 210 +++Q+ Y L+ ++ L + + T +A + W+ P Y Sbjct: 175 DLYQT--YHV-LVGDLIKFSAETLSELIRT-TLDAEKVFTQGLNILEWLENPSNTPDKDY 230 Query: 211 LGDRSENINSLKLSKWLVLLNNYVISTAIVM--------IFFWGIALLSLGIDTVQTMAG 262 L S I S L ++ L +YV+ TA ++ + G S G+ T +A Sbjct: 231 LL--SIPI-SCPLIG-VIQLAHYVV-TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285 Query: 263 KTHWTLYI------LETGLLFAVGI-------------AIIM------QGV--SMF-VKE 294 W + + +LF +G+ +I+ +GV M + Sbjct: 286 TDSWESFFVSVRKAIT--VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343 Query: 295 LTSSF---------------RGISTSLIPGA---ILAIDCSAIYGF--------APNALI 328 LT + + SL+ GA +++ ++YG AP+ L Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL- 402 Query: 329 WGFIWGAIGQISTI--------LVMLF------FHSPILIVPGFIPMFFSNATIGI---F 371 Q S I F FHS +L A+ I Sbjct: 403 --------DQ-SRIPFSERKLKFSNRFLPVASPFHSHLL----------VPASDLINKDL 443 Query: 372 ANHYGGWRAAS-KI 384 + + A +I Sbjct: 444 VKNNVSFNAKDIQI 457 Score = 29.1 bits (65), Expect = 2.0 Identities = 30/156 (19%), Positives = 47/156 (30%), Gaps = 70/156 (44%) Query: 4 FAHCF----SFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGA 59 F++ F S FHS +L + I + Sbjct: 416 FSNRFLPVASPFHSHLLVPAS--------------------------DLI----NKDLVK 445 Query: 60 DILVKKSKAIITKISVIHHIDG--------SIIDPYVFMFSCITSLGDKY----NFVGYT 107 + + +K I +I V DG SI + + CI L K+ F T Sbjct: 446 NNVSFNAKDI--QIPVYDTFDGSDLRVLSGSISER---IVDCIIRLPVKWETTTQF-KAT 499 Query: 108 VLIAF----------LLNILMVIFRHL--TGIRTIV 131 ++ F L + R+ TG+R IV Sbjct: 500 HILDFGPGGASGLGVLTH------RNKDGTGVRVIV 529 >3k07_A Cation efflux system protein CUSA; transmembrane helix, cell inner membrane, cell membrane, COP transport, ION transport, membrane; 3.52A {Escherichia coli k-12} PDB: 3kso_A 3kss_A Length = 1055 Score = 30.9 bits (69), Expect = 0.61 Identities = 25/231 (10%), Positives = 60/231 (25%), Gaps = 1/231 (0%) Query: 213 DRSENINSLKLSKWLVLLNNYVISTAIVMIFFWGIALLSLGIDTVQTMAGKTHWTLYILE 272 DRS+ I+ + LL +++ + +F W + + I ++ ++ Sbjct: 334 DRSQLIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQG 393 Query: 273 TGLLFAVGIAIIMQGVSMFVKELTSSFRGISTSLIPGAILAIDCSAIYGFAPNALIWGFI 332 I + V V L D + + + Sbjct: 394 LNANIMSLGGIAI-AVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASV 452 Query: 333 WGAIGQISTILVMLFFHSPILIVPGFIPMFFSNATIGIFANHYGGWRAASKICFVMGVIE 392 ++L++ PI + G F G A + ++ Sbjct: 453 EVGPALFISLLIITLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYW 512 Query: 393 ILGSIWAIQLAKTDSWMGMADWSLIAPLIMQGFKLTHFFIIPIGLLSVIYM 443 I G I + ++ L+ ++ + + + Sbjct: 513 IRGKIPPESSNPLNRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLN 563 >2g0t_A Conserved hypothetical protein; TM0796, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; 2.67A {Thermotoga maritima} SCOP: c.37.1.10 Length = 350 Score = 28.6 bits (64), Expect = 2.7 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 300 RGISTSLIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPG-- 357 +GI + I A G+ +A+ F+ G + + +L + I+ V G Sbjct: 197 KGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKA--VLKLEKTGKEIVFVEGQG 254 Query: 358 -FIPMFFSNATIGI 370 + T+G+ Sbjct: 255 ALRHPAYGQVTLGL 268 >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Length = 851 Score = 27.7 bits (61), Expect = 5.7 Identities = 9/43 (20%), Positives = 17/43 (39%) Query: 197 QQVASWIAYKIAPYLGDRSENINSLKLSKWLVLLNNYVISTAI 239 QVASW ++ L + + L+ + + +S I Sbjct: 721 AQVASWTVNELVAGLRAGEVKVRAADLAPLAEGVASGQLSARI 763 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.330 0.142 0.442 Gapped Lambda K H 0.267 0.0455 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,869,033 Number of extensions: 172439 Number of successful extensions: 543 Number of sequences better than 10.0: 1 Number of HSP's gapped: 536 Number of HSP's successfully gapped: 58 Length of query: 461 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 365 Effective length of database: 3,365,806 Effective search space: 1228519190 Effective search space used: 1228519190 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 58 (26.8 bits)