HHsearch alignment for GI: 254781170 and conserved domain: PRK10674
>PRK10674 deoxyribodipyrimidine photolyase; Provisional.
Probab=100.00 E-value=0 Score=1121.27 Aligned_cols=471 Identities=55% Similarity=1.024 Sum_probs=429.9
Q ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 64268883586755677899999995798299999738378478889989999999999999999997598099996575
Q gi|254781170|r 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86 (483)
Q Consensus 7 M~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~ 86 (483)
T Consensus 1 M~~~ivWFRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~i~~~~~ 80 (472)
T PRK10674 1 MTTHLVWFRNDLRLHDNLALAAACRDPSARVLALYIATPAQWAAHNMAPRQAAFINAQLNALQIALAEKGIPLLFHEVDD 80 (472)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 97079996999756178999999977999699999985666406897999999999999999999997799779997676
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 35089999999987097614210011100110010268887520000002234345557600237864432101479988
Q gi|254781170|r 87 FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI 166 (483)
Q Consensus 87 ~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~ 166 (483)
T Consensus 81 ~~~~~~~l~~l~~~~~i~~v~~n~~~~~~~~~RD~~i~~~~~-~i~~~~~~~~~l~~p~~v~~~~~~~ykvfTpf~k~~~ 159 (472)
T PRK10674 81 FAASVEWVKQVCQQHQVTHLFYNYQYEVNERQRDVAVERTLR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAFL 159 (472)
T ss_pred CCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCC-CCEEEEECCCEEECCCCEECCCCCCCCCCCHHHHHHH
T ss_conf 546899999999980997899836457518999999998755-9828997581874655016799996764877889999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
Q ss_conf 631566322124554456776675557532347643-4554688876433322111111101101202686545666544
Q gi|254781170|r 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245 (483)
Q Consensus 167 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrL 245 (483)
T Consensus 160 ~~~~~~~p~~~p~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gGE~~A~~~L~~Fl~~~~~~Y~~~Rn~P~~~~tSrL 238 (472)
T PRK10674 160 KRLREGDPECVPAPKVRSSGAIEPLPPIP-LNYPQQSFDTALFPVEEKAAIAQLRQFCQEGAGEYEQQRDFPAVEGTSRL 238 (472)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 87321276558897644456789988533-37987776313579559999999999997247652411588676676656
Q ss_pred CHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCHHHHHH
Q ss_conf 61111464879999999999864311123477200102320246888788863357888615301101200010467899
Q gi|254781170|r 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325 (483)
Q Consensus 246 SPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~~~~~a 325 (483)
T Consensus 239 SPyL~fG~IS~R~v~~~~~~~~~~~~--~~~~~~~~~~eL~WRef~~~~l~~~P~~~~~~~~~~~~~~~~w~~~~~~f~a 316 (472)
T PRK10674 239 SASLATGGLSPRQCLHRLLAEQPQAL--DGGAGSVWLNELIWREFYRHLMTAYPSLCKHRPFIAWTDRVQWQSNPAHLQA 316 (472)
T ss_pred CHHHHCCCCCHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHCCCCCCCHHHHHH
T ss_conf 89982963569999999999867520--2675288988889999999999978466542534155652776579899998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCC
Q ss_conf 87227888688999999997167635899999999998410470022334776641331114745610020127898470
Q gi|254781170|r 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405 (483)
Q Consensus 326 W~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G~d~~~~ 405 (483)
T Consensus 317 W~~G~TG~P~VDA~MR~L~~tGwm~nR~R~~vaSFl~~~L~idWr~g~~~f~~~l~D~d~~~n~~~Wqw~a~~G~d~~~~ 396 (472)
T PRK10674 317 WQQGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPY 396 (472)
T ss_pred HHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 74799999627599999999769788999999999998649992778999999852257345873341112567888885
Q ss_pred CCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 2204645898872489978330082432799778049554013125789999763189999999999999996400
Q gi|254781170|r 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 (483)
Q Consensus 406 ~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~~~~~~~YP~pivd~~~~~~~a~~~~~~~~k~~ 481 (483)
T Consensus 397 ~Ri~nP~~q~~~~Dp~g~fir~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~YP~piVd~~~ar~~a~~~~~~~~k~~ 472 (472)
T PRK10674 397 FRIFNPTTQGERFDRDGEFIRRWLPELRDVPGKAIHEPWRWAEKAGVTLDYPQPIVDHKQARLATLAAYEAARKGA 472 (472)
T ss_pred CEEECHHHHHHHHCCCCCCHHHHCHHHHCCCHHHHCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 2155787889985989876467386531699888349300764237678998565878999999999999986559