HHsearch alignment for GI: 254781170 and conserved domain: TIGR02766
>TIGR02766 crypt_chrom_pln cryptochrome, plant family; InterPro: IPR014134 At least five major families of cryptochromes and photolyases share FAD cofactor binding, sequence homologues, and the ability to react to short wavelengths of visible light. Photolyases are responsible for light-dependent DNA repair by removal of two types of UV-induced DNA dimerisation. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light..
Probab=100.00 E-value=0 Score=654.82 Aligned_cols=458 Identities=29% Similarity=0.521 Sum_probs=398.1
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 68883586755677899999995798299999738378478889989999999999999999997598099996575350
Q gi|254781170|r 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89 (483)
Q Consensus 10 ~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g~ 89 (483)
T Consensus 2 ~~vWfrrdlr~~dnPala~a~~~--G~v~~~f~W~P~~~G~~~PGr~srWWl~~sl~~l~~sl~~lG~~l~~~~~---~~ 76 (481)
T TIGR02766 2 TVVWFRRDLRVEDNPALAAAARE--GEVLPVFVWAPEEEGQFYPGRVSRWWLKQSLAHLSQSLRSLGAKLVLIRS---ED 76 (481)
T ss_pred EEEEEECCCCCCCCHHHHHHHHC--CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_conf 06876400220366478887525--97489998634457861786204788999999999999862058778854---88
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 899999999870976142100111001100102688875-2000000223434555760023786443210147998863
Q gi|254781170|r 90 SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 (483)
Q Consensus 90 ~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~~~ 168 (483)
T Consensus 77 ~~~~ll~~~~~~Ga~~~~fnhlydP~slvrd~~~k~~l~~~Gi~~~sfn~dllyePWe~~~~~G~~f~~f~~~W~~Cl~~ 156 (481)
T TIGR02766 77 TVEALLDVVRSTGATRLVFNHLYDPVSLVRDHRVKEKLAAEGISVQSFNADLLYEPWEVYDEKGKAFTMFAAYWEKCLEL 156 (481)
T ss_pred HHHHHHHHHHHCCCCEEHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf 99999999975064001033312623332226899999857845776153101275001205786135788999986147
Q ss_pred CCCCCCCCCCCCCCC---CCCCCCCCCCCCCC--C---CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 156632212455445---67766755575323--4---764-34554688876433322111111101101202686545
Q gi|254781170|r 169 LVQADLRSLPVPAIR---LTGPVTPSNIPRFF--D---YPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239 (483)
Q Consensus 169 ~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~--~---~~~-~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~ 239 (483)
T Consensus 157 ~~~~~~~~~~P~~~~p~~~~~~~~~C~~~~l~~e~~~e~~snall~raWsPGW~n~~k~l~~f~~~~l~~y~~~~~k~~~ 236 (481)
T TIGR02766 157 PIDAESPLLPPKKLVPVTASEDVSACSVDDLVLEDDSEKGSNALLARAWSPGWSNADKLLEEFINKPLLEYSKNRKKVDG 236 (481)
T ss_pred CCCCCCCCCCCCCEEECCCHHHHHHCCCHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 54520024785203312321234430100100233223202456443237771127899999863367877653000000
Q ss_pred CCCCCCCHHHCCCCCCHHHHHHHHHHHHH----HHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCC
Q ss_conf 66654461111464879999999999864----31112347720010232024688878886335788861530110120
Q gi|254781170|r 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315 (483)
Q Consensus 240 ~~tSrLSPyL~~G~IS~R~v~~~~~~~~~----~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~ 315 (483)
T Consensus 237 ~~tsllsP~lhfGe~svr~vf~~~r~~q~~W~~~~~~~~ees~~lfl~~iGlreysry~~fn~P~~-he~~ll~~l~~fP 315 (481)
T TIGR02766 237 ASTSLLSPYLHFGEVSVRKVFQLVRMKQIVWANEGNSEAEESVDLFLRSIGLREYSRYLSFNFPFT-HEKSLLGHLKFFP 315 (481)
T ss_pred CCHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC-CHHHHHHHHCCCC
T ss_conf 100000321120203578899888887765311352025688888887502134433321137752-0157885210265
Q ss_pred HHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEE
Q ss_conf 00104678998722788868899999999716763589999999999841047002233477664133111474561002
Q gi|254781170|r 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395 (483)
Q Consensus 316 w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~ 395 (483)
T Consensus 316 W~~~~~~fk~WrqG~tGyPlvdaGmrelWatGW~h~rirv~~ssf~vk~l~lPW~WGmkyfWd~lldadle~d~lGWqyi 395 (481)
T TIGR02766 316 WKVDEEKFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFAVKVLLLPWRWGMKYFWDTLLDADLESDILGWQYI 395 (481)
T ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHCCEEE
T ss_conf 11203555554068888840343357776504200202102445778887343021157888887630010000010012
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHH------CCCCCCCCCCCCCHHHHHHH
Q ss_conf 012789847022046458988724899783300824327997780495540131------25789999763189999999
Q gi|254781170|r 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH 469 (483)
Q Consensus 396 a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~------~~~~~~YP~pivd~~~~~~~ 469 (483)
T Consensus 396 ~G~lPd~~el~r~dnP~~~G~k~dP~G~y~r~WlPel~rlPt~WihhPW~aP~~~l~~~GvelG~ny~~Piv~l~~a~~~ 475 (481)
T TIGR02766 396 SGSLPDGRELDRLDNPQLEGAKYDPEGEYVRRWLPELARLPTEWIHHPWDAPESVLKAAGVELGSNYPKPIVDLDAARER 475 (481)
T ss_pred ECCCCCCCHHHHCCCCCCCCCEECCCCHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 12578720001115633366114787313765303654067224047632157899750201034455420117899999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254781170|r 470 TLNQ 473 (483)
Q Consensus 470 a~~~ 473 (483)
T Consensus 476 l~~~ 479 (481)
T TIGR02766 476 LDEA 479 (481)
T ss_pred HHHH
T ss_conf 9862