HHsearch alignment of GI: 254781170 and MMDB domain: 1dnp_A_1-140
>1dnp_A (A:1-140) DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon; HET: DNA FAD MHF; 2.30A {Escherichia coli}
Probab=99.97 E-value=1.3e-31 Score=220.38 Aligned_cols=140 Identities=49% Similarity=0.880 Sum_probs=132.0
Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 42688835867556778999999957982999997383784788899899999999999999999975980999965753
Q gi|254781170|r 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF 87 (483)
Q Consensus 8 ~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~ 87 (483)
|++|||||||||++||+||.+|++.++.+++||||++|.+++.+..|++|++|+++||.+|+++|+++|++|+++.|...
T Consensus 1 s~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~g~~~ 80 (140)
T 1dnp_A 1 TTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDF 80 (140)
T ss_dssp CEEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSH
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 94899828985444589999999749996899999872564489968999999999999999999977996799976754
Q ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHHCCCCEECCCCCCCCCCCCC
Q ss_conf 5089999999987097614210011100110010268887520000002234345557600
Q gi|254781170|r 88 DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148 (483)
Q Consensus 88 g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~~~~~~~~~~~~l~~p~~i~ 148 (483)
++..++|.+++++++|+.||+|++|++++++||..+++.++ ++.+..+++++|++|++|.
T Consensus 81 ~~~~~~l~~l~~~~~i~~V~~~~~~~~~~~~~d~~i~~~l~-~i~~~~~~~~~L~~~~~i~ 140 (140)
T 1dnp_A 81 VASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALR-NVVCEGFDDSVILPPGAVM 140 (140)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCT-TSEEEEECCSSSSCTTSSC
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHC-CCCEEECCCCEEEEECEEC
T ss_conf 26899999999983970899832432145568999998742-6845634882785302010