HHsearch alignment of GI: 254781170 and MMDB domain: 1dnp_A_1-140

>1dnp_A (A:1-140) DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon; HET: DNA FAD MHF; 2.30A {Escherichia coli}
Probab=99.97  E-value=1.3e-31  Score=220.38  Aligned_cols=140  Identities=49%  Similarity=0.880  Sum_probs=132.0

Q ss_pred             CEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             42688835867556778999999957982999997383784788899899999999999999999975980999965753
Q gi|254781170|r    8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF   87 (483)
Q Consensus         8 ~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~   87 (483)
                      |++|||||||||++||+||.+|++.++.+++||||++|.+++.+..|++|++|+++||.+|+++|+++|++|+++.|...
T Consensus         1 s~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~g~~~   80 (140)
T 1dnp_A            1 TTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDF   80 (140)
T ss_dssp             CEEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSH
T ss_pred             CCEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             94899828985444589999999749996899999872564489968999999999999999999977996799976754


Q ss_pred             CCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHHCCCCEECCCCCCCCCCCCC
Q ss_conf             5089999999987097614210011100110010268887520000002234345557600
Q gi|254781170|r   88 DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL  148 (483)
Q Consensus        88 g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~~~~~~~~~~~~l~~p~~i~  148 (483)
                      ++..++|.+++++++|+.||+|++|++++++||..+++.++ ++.+..+++++|++|++|.
T Consensus        81 ~~~~~~l~~l~~~~~i~~V~~~~~~~~~~~~~d~~i~~~l~-~i~~~~~~~~~L~~~~~i~  140 (140)
T 1dnp_A           81 VASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALR-NVVCEGFDDSVILPPGAVM  140 (140)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCT-TSEEEEECCSSSSCTTSSC
T ss_pred             CCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHC-CCCEEECCCCEEEEECEEC
T ss_conf             26899999999983970899832432145568999998742-6845634882785302010