HHsearch alignment of GI: 254781170 and MMDB domain: 1np7_A_1-146
>1np7_A (A:1-146) DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP}
Probab=99.97 E-value=6.2e-31 Score=216.05 Aligned_cols=140 Identities=25% Similarity=0.373 Sum_probs=127.5
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCC-----CCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99888864268883586755677899999995798299999738378478-----8899899999999999999999975
Q gi|254781170|r 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQVQKSLSQK 75 (483)
Q Consensus 1 m~~~~~M~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~-----~~~~~~~~~Fl~esL~~L~~~L~~~ 75 (483)
|++.. ...|||||||||++||+||.+|++.++ +++||||+||.++.. ...|++|.+|++|||.+|+++|+++
T Consensus 1 m~~~~--~~vl~WfrrDLRl~DN~aL~~A~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~ 77 (146)
T 1np7_A 1 MKHVP--PTVLVWFRNDLRLHDHEPLHRALKSGL-AITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKV 77 (146)
T ss_dssp CCCCC--CEEEEEESSCCCSTTCHHHHHHHHTTS-EEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCC--CCEEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEEECHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99899--988998389853747899999995799-299999987378504574422024999999999999999999977
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCC
Q ss_conf 98099996575350899999999870976142100111001100102688875-2000000223434555760
Q gi|254781170|r 76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSI 147 (483)
Q Consensus 76 g~~L~v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i 147 (483)
|++|+++. |++.++|.+++++++|+.||+|.+|+++++++|+.|.+.|+ .++.+..+++++|++|++|
T Consensus 78 g~~L~v~~----g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~d~~i~~~l~~~gi~~~~~~~~~l~~~~~i 146 (146)
T 1np7_A 78 GNKLLVTT----GLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDL 146 (146)
T ss_dssp TCCEEEEE----SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGS
T ss_pred CCCEEEEE----CCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf 99669997----8999999999998599689993664640144679999988741732012332123576413