HHsearch alignment of GI: 254781170 and MMDB domain: 1np7_A_314-441

>1np7_A (A:314-441) DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP}
Probab=100.00  E-value=0  Score=330.99  Aligned_cols=127  Identities=48%  Similarity=0.936  Sum_probs=122.9

Q ss_pred             HHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCC
Q ss_conf             10120001046789987227888688999999997167635899999999998410470022334776641331114745
Q gi|254781170|r  311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG  390 (483)
Q Consensus       311 ~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~  390 (483)
                      ++.++|++|.+.+++|++|+||+|+||||||||++||||||++|||||||+++.|++|||.|++||+++|||||+++|++
T Consensus         2 ~~~~~~~~~~~~~~~w~~G~Tg~p~idaamr~L~~~G~~H~~~R~~va~~~~~~l~~~w~~g~~~f~~~liD~d~~~~~~   81 (128)
T 1np7_A            2 NKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWG   81 (128)
T ss_dssp             TCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHCTTCCHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHCHH
T ss_conf             43466535545556523489999457999999998788268999999999985678790789999998714765532888


Q ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHH
Q ss_conf             610020127898470220464589887248997833008243279977
Q gi|254781170|r  391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ  438 (483)
Q Consensus       391 ~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~  438 (483)
                      +|||++|+|++..+ +|+|||++|++++||+|+|||+|||||+++|.+
T Consensus        82 ~wq~~~G~~~~~~~-~r~~~~~~~~~~~dp~g~y~~~~~pel~~~P~e  128 (128)
T 1np7_A           82 NWNYTAGIGNDARD-FRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGD  128 (128)
T ss_dssp             HHHHHHTSSCCTTS-CCCCCHHHHHHHHSTTSHHHHHHCGGGTTCCSG
T ss_pred             HHHHHHCCCCCCCC-CEECCHHHHHHHHCCCCCCHHHHCHHHHCCCHH
T ss_conf             77888547889998-611388899998698976578748764169977