HHsearch alignment of GI: 254781170 and MMDB domain: 1owl_A_1-196
>1owl_A (A:1-196) Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus pcc 6301}
Probab=100.00 E-value=3.6e-38 Score=262.10 Aligned_cols=163 Identities=24% Similarity=0.366 Sum_probs=153.5
Q ss_pred CC-EEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 64-26888358675567789999999579829999973837847888998999999999999999999759809999657
Q gi|254781170|r 7 MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCS 85 (483)
Q Consensus 7 M~-~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~ 85 (483)
|+ ..|||||||||++||+||.+|++.++ +|+||||+||.+++.+..|.+|.+|+++||.+|+++|+++|++|+++.
T Consensus 1 M~~~vi~WfrrDLRl~DN~aL~~A~~~~~-~v~~v~v~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~-- 77 (196)
T 1owl_A 1 MAAPILFWHRRDLRLSDNIGLAAARAQSA-QLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQ-- 77 (196)
T ss_dssp --CCEEEEESSCCCSSSCHHHHHHHHHCS-CEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEE--
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE--
T ss_conf 99878999789853505899999996699-799999987667518997899999999999999999997899579999--
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHH-CCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 53508999999998709761421001110011001026888752-00000022343455576002378644321014799
Q gi|254781170|r 86 NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164 (483)
Q Consensus 86 ~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~-~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~ 164 (483)
|++.++|.+++++++|+.|++|++|+++++++|..|++.|+. ++.+..+++++|++|+.+.++.+.+|+|||||+|+
T Consensus 78 --g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~i~~~l~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~vftpf~k~ 155 (196)
T 1owl_A 78 --GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKN 155 (196)
T ss_dssp --SCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHH
T ss_pred --ECHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCEEECCCCCCCCCCCHHHHH
T ss_conf --478999999999849988999601464045666554333311583001035652026762133799975322188999
Q ss_pred HHHHCCCCCC
Q ss_conf 8863156632
Q gi|254781170|r 165 LIQNLVQADL 174 (483)
Q Consensus 165 ~~~~~~~~~~ 174 (483)
|.+...+.+.
T Consensus 156 ~~~~~~~~~~ 165 (196)
T 1owl_A 156 WQAQPKPTPV 165 (196)
T ss_dssp HHHSCCCCCC
T ss_pred HHHCCCCCCC
T ss_conf 9855555666