HHsearch alignment of GI: 254781170 and MMDB domain: 1u3d_A_318-446
>1u3d_A (A:318-446) Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana}
Probab=100.00 E-value=0 Score=346.17 Aligned_cols=129 Identities=45% Similarity=0.933 Sum_probs=126.0
Q ss_pred HHHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCC
Q ss_conf 11012000104678998722788868899999999716763589999999999841047002233477664133111474
Q gi|254781170|r 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389 (483)
Q Consensus 310 ~~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~ 389 (483)
+++.++|+++++.+++|++|+||+|+||||||||++||||||++|||||||||+.|++|||+|+.||+++|||||+++|+
T Consensus 1 ~~~~~~~~~~~~~~e~w~~G~Tg~p~idAamrqL~~tG~~h~~~R~~va~~l~~~l~~~w~~g~~~f~~~liD~d~a~n~ 80 (129)
T 1u3d_A 1 HLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDA 80 (129)
T ss_dssp TTTTCCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCH
T ss_conf 00345333687999988500028866999999999851146899999998989871611667678899996536747585
Q ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHH
Q ss_conf 5610020127898470220464589887248997833008243279977
Q gi|254781170|r 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 (483)
Q Consensus 390 ~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~ 438 (483)
+||||++|+|+|+.|++|+|||++|++++||+|+|||+|||||+++|.+
T Consensus 81 ~~w~w~~G~~~~~~~~~r~~~~i~~~~~~d~~g~yi~~~~pel~~~P~e 129 (129)
T 1u3d_A 81 LGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTD 129 (129)
T ss_dssp HHHHHHHTCSTTCCCSSCCCCHHHHHHHHCTTSHHHHHHCGGGTTCCHH
T ss_pred HHHHHHHCCCCCCCCCCEECCHHHHHHHHCCCCCHHHHHCHHHHCCCHH
T ss_conf 8677362378888883013598899998688975188849241149977