HHsearch alignment of GI: 254781170 and MMDB domain: 2j4d_A_1-33_184-316
>2j4d_A (A:1-33,A:184-316) Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=99.90 E-value=7e-24 Score=171.16 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=101.9
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCC
Q ss_conf 5557600237864432101479988631566322124554456776675557532347643----455468887643332
Q gi|254781170|r 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ----AIDPMFPIGEQNALH 217 (483)
Q Consensus 142 ~~p~~i~~~~~~~~~vftpf~k~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~gGe~~A~~ 217 (483)
++...-+++.|++|+|||||+++|.+......+...|.+............++.+.+.+.. .....|+|||++|++
T Consensus 28 ~~~~~~~~~~g~~y~vfTpF~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~gGe~~A~~ 107 (166)
T 2j4d_A 28 LPSSSSPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVG 107 (166)
T ss_dssp CSCCTTSSCGGGCCSSHHHHHHHHHHHCCCCCCCCBCSCCCCCCCCSCCCCCCCTTTTTCCCCCCCSEEEECCSHHHHHH
T ss_pred CCCCHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 87750245457753100467777775303455410013457766632000001055405564223443346755677765
Q ss_pred CCCCCCCCCCC--HHHHCCCC-CCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 21111111011--01202686-5456665446111146487999999999986431
Q gi|254781170|r 218 ILRKFCKEKVY--YYVEQRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270 (483)
Q Consensus 218 ~L~~Fl~~~l~--~Y~~~Rn~-p~~~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~ 270 (483)
+|++||++++. +|.+.|+. |+.++||+|||||+|||||||+||+++.+...+.
T Consensus 108 ~L~~Fl~~~l~~y~y~~~r~~~~~~~~tS~LSPYL~fG~ISpR~v~~~~~~~~~~~ 163 (166)
T 2j4d_A 108 RVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKER 163 (166)
T ss_dssp HHHHHHTTSCCGGGHHHHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHC
T ss_conf 44555653122011101135777766314577642100147999999999876520