HHsearch alignment of GI: 254781170 and MMDB domain: 2j4d_A_34-183
>2j4d_A (A:34-183) Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=99.97 E-value=1.8e-30 Score=213.10 Aligned_cols=141 Identities=23% Similarity=0.399 Sum_probs=126.1
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99888864268883586755677899999995798299999738378478------889989999999999999999997
Q gi|254781170|r 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQSHFIYASLLQVQKSLSQ 74 (483)
Q Consensus 1 m~~~~~M~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~------~~~~~~~~~Fl~esL~~L~~~L~~ 74 (483)
|+.+.+ .+.|||||||||++||+||.+|++.++ +++||||+||.++.. +..|++|.+|+++||.+|+++|++
T Consensus 1 ~~~~~~-~~~l~Wfr~DLRl~DN~aL~~A~~~~~-~~~~vyv~~p~~~~~~~~~~~~~~~~~r~~fl~~sL~~L~~~L~~ 78 (150)
T 2j4d_A 1 VKRKGK-GVTILWFRNDLRVLDNDALYKAWSSSD-TILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMK 78 (150)
T ss_dssp CCCTTC-CEEEEEESSCCCSTTCHHHHHHHHTCS-EEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCC-CEEEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 105899-418999899843515799999996499-799999985457344432358775799999999999999999997
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHH-CC--CCEECCCCCCCCCCCC
Q ss_conf 5980999965753508999999998709761421001110011001026888752-00--0000223434555760
Q gi|254781170|r 75 KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RV--ICKSFDDSVLLPPGSI 147 (483)
Q Consensus 75 ~g~~L~v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~-~~--~~~~~~~~~l~~p~~i 147 (483)
+|++|+++. |++.+++.+++++++|+.||+|.+++++++++|.+|.+.|+. ++ .+.++++++|++|+++
T Consensus 79 ~g~~L~v~~----g~~~~~~~~l~~~~~i~~V~~~~~~~~~~~~~d~~i~~~l~~~gi~v~~~~~~~~~l~~p~~l 150 (150)
T 2j4d_A 79 RGLNLLIRS----GKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDL 150 (150)
T ss_dssp TTCCCEEEE----SCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCSSCEEEEECCSCSSCGGGS
T ss_pred CCCCEEEEE----CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEECCC
T ss_conf 799679998----988999999999678758982465677999999999999876236554201057501210222