HHsearch alignment of GI: 254781170 and MMDB domain: 3fy4_A_196-290
>3fy4_A (A:196-290) 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=99.71 E-value=3.3e-18 Score=135.04 Aligned_cols=78 Identities=29% Similarity=0.443 Sum_probs=64.2
Q ss_pred CCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHCCCCCC---CCCCCCCCHHHCCCCCCHHHHHHHH
Q ss_conf 7532347643----455468887643332211111110--110120268654---5666544611114648799999999
Q gi|254781170|r 193 IPRFFDYPFQ----AIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPA---IQGTSQLSPYLSIGVLSPRQCWNRL 263 (483)
Q Consensus 193 ~~~~~~~~~~----~~~~~~~gGe~~A~~~L~~Fl~~~--l~~Y~~~Rn~p~---~~~tSrLSPyL~~G~IS~R~v~~~~ 263 (483)
+|.+.+++.. .....|+|||.+|+++|++|+.++ +.+|.+.||.|+ .++||+|||||+|||||||+||+++
T Consensus 4 iP~l~~l~~~~~~~~~~~~~~gGe~~A~~rL~~Fl~~~~~~~~Y~~~R~~p~~~~~~~tS~LSpyL~~G~IS~r~~~~~~ 83 (95)
T 3fy4_A 4 VPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCL 83 (95)
T ss_dssp CCCTTTTTCCGGGSSCCCSCCCSHHHHHHHHHHHTCCHHHHHTCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHH
T ss_pred CCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 44355506765332334767761556666666665555456654101357543357887510022566656699999999
Q ss_pred HHHHHHH
Q ss_conf 9986431
Q gi|254781170|r 264 KEEFVDL 270 (483)
Q Consensus 264 ~~~~~~~ 270 (483)
.+...+.
T Consensus 84 ~~~~~~~ 90 (95)
T 3fy4_A 84 QNIYKDV 90 (95)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
T ss_conf 9987751