HHsearch alignment of GI: 254781170 and MMDB domain: 3fy4_A_196-290

>3fy4_A (A:196-290) 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=99.71  E-value=3.3e-18  Score=135.04  Aligned_cols=78  Identities=29%  Similarity=0.443  Sum_probs=64.2

Q ss_pred             CCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHCCCCCC---CCCCCCCCHHHCCCCCCHHHHHHHH
Q ss_conf             7532347643----455468887643332211111110--110120268654---5666544611114648799999999
Q gi|254781170|r  193 IPRFFDYPFQ----AIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPA---IQGTSQLSPYLSIGVLSPRQCWNRL  263 (483)
Q Consensus       193 ~~~~~~~~~~----~~~~~~~gGe~~A~~~L~~Fl~~~--l~~Y~~~Rn~p~---~~~tSrLSPyL~~G~IS~R~v~~~~  263 (483)
                      +|.+.+++..    .....|+|||.+|+++|++|+.++  +.+|.+.||.|+   .++||+|||||+|||||||+||+++
T Consensus         4 iP~l~~l~~~~~~~~~~~~~~gGe~~A~~rL~~Fl~~~~~~~~Y~~~R~~p~~~~~~~tS~LSpyL~~G~IS~r~~~~~~   83 (95)
T 3fy4_A            4 VPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCL   83 (95)
T ss_dssp             CCCTTTTTCCGGGSSCCCSCCCSHHHHHHHHHHHTCCHHHHHTCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHH
T ss_pred             CCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             44355506765332334767761556666666665555456654101357543357887510022566656699999999


Q ss_pred             HHHHHHH
Q ss_conf             9986431
Q gi|254781170|r  264 KEEFVDL  270 (483)
Q Consensus       264 ~~~~~~~  270 (483)
                      .+...+.
T Consensus        84 ~~~~~~~   90 (95)
T 3fy4_A           84 QNIYKDV   90 (95)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
T ss_conf             9987751