Query         gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 483
No_of_seqs    261 out of 3686
Neff          8.8 
Searched_HMMs 33803
Date          Wed Jun  1 22:46:06 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781170.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2j4d_A Cryptochrome 3, crypto 100.0       0       0  495.3   8.4  203  277-481     2-206 (209)
  2 >2j07_A Deoxyribodipyrimidine  100.0       0       0  448.7   8.7  174  255-436     1-174 (174)
  3 >1dnp_A DNA photolyase; DNA re 100.0       0       0  411.4   8.9  162  275-436     2-163 (163)
  4 >1u3d_A Cryptochrome 1 apoprot 100.0       0       0  358.1  19.3  241    9-254    13-259 (259)
  5 >1owl_A Photolyase, deoxyribod 100.0       0       0  356.4   6.8  139  311-450     2-140 (141)
  6 >2e0i_A 432AA long hypothetica 100.0       0       0  351.6   8.2  137  310-448     1-137 (139)
  7 >1u3d_A Cryptochrome 1 apoprot 100.0       0       0  346.2   7.6  129  310-438     1-129 (129)
  8 >1np7_A DNA photolyase; protei 100.0       0       0  331.0   7.2  127  311-438     2-128 (128)
  9 >2wq7_A RE11660P; lyase-DNA co 100.0       0       0  331.4   5.5  127  311-438     2-129 (129)
 10 >3fy4_A 6-4 photolyase; DNA re 100.0       0       0  318.8   5.0  127  311-438     2-129 (129)
 11 >1owl_A Photolyase, deoxyribod 100.0 3.6E-38 1.1E-42  262.1  17.8  163    7-174     1-165 (196)
 12 >2j07_A Deoxyribodipyrimidine  100.0 4.5E-34 1.3E-38  236.0  13.7  148    7-170     1-148 (149)
 13 >1dnp_A DNA photolyase; DNA re 100.0 1.3E-31 3.8E-36  220.4  13.2  140    8-148     1-140 (140)
 14 >1np7_A DNA photolyase; protei 100.0 6.2E-31 1.8E-35  216.1  16.5  140    1-147     1-146 (146)
 15 >2j4d_A Cryptochrome 3, crypto 100.0 1.8E-30 5.3E-35  213.1  16.4  141    1-147     1-150 (150)
 16 >1np7_A DNA photolyase; protei 100.0 1.5E-31 4.5E-36  219.9   7.6  150  152-304     5-163 (167)
 17 >3fy4_A 6-4 photolyase; DNA re 100.0 1.9E-29 5.5E-34  206.6  13.8  128    8-140     5-142 (142)
 18 >2wq7_A RE11660P; lyase-DNA co 100.0   7E-29 2.1E-33  203.0  13.4  131    6-140    27-163 (163)
 19 >2e0i_A 432AA long hypothetica 100.0 2.1E-30 6.2E-35  212.7   5.0  133  151-308     1-134 (135)
 20 >2e0i_A 432AA long hypothetica 100.0 6.1E-28 1.8E-32  197.0  13.8  129    7-143     1-131 (132)
 21 >1owl_A Photolyase, deoxyribod  99.9   1E-26 2.9E-31  189.3   2.9  103  205-308     7-110 (111)
 22 >2j4d_A Cryptochrome 3, crypto  99.9   7E-24 2.1E-28  171.2   7.3  129  142-270    28-163 (166)
 23 >3fy4_A 6-4 photolyase; DNA re  99.7 3.3E-18 9.8E-23  135.0   3.8   78  193-270     4-90  (95)
 24 >1dnp_A DNA photolyase; DNA re  99.7 3.2E-18 9.5E-23  135.1   2.8   68  202-269    11-78  (80)
 25 >2wq7_A RE11660P; lyase-DNA co  99.7 4.9E-18 1.5E-22  134.0   2.4   79  191-269     4-89  (94)
 26 >3fy4_A 6-4 photolyase; DNA re  99.1 9.2E-11 2.7E-15   87.7   4.4   44  439-482     1-50  (86)
 27 >2wq7_A RE11660P; lyase-DNA co  93.1   0.025 7.5E-07   34.0   0.6   23  280-302    61-83  (89)
 28 >3fy4_A 6-4 photolyase; DNA re  90.3     0.1   3E-06   30.2   1.1   25  278-302    55-79  (85)
 29 >3dlo_A Universal stress prote  67.6     7.9 0.00023   18.1  11.3   82   24-109    40-124 (155)
 30 >3a1c_A Probable copper-export  54.1      14  0.0004   16.6   3.9   68   21-111    21-88  (165)
 31 >2gvs_A Chemosensory protein C  52.8     3.2 9.6E-05   20.6  -0.1   21  415-435    87-107 (109)
 32 >2gm3_A Unknown protein; AT3G0  49.9      16 0.00047   16.2  11.1  104    5-110     2-132 (175)
 33 >2ewf_A Nicking endonuclease N  47.5     5.2 0.00015   19.3   0.3   32  333-364   109-148 (153)
 34 >1k19_A Chemosensory protein C  45.8     4.1 0.00012   19.9  -0.4   19  415-433    85-103 (112)
 35 >2izo_A FEN1, flap structure-s  41.4      22 0.00064   15.4   6.0   13   36-48     69-81  (254)
 36 >1k8k_D P34, ARP2/3 complex 34  39.0      10  0.0003   17.4   0.7   15  347-361   136-150 (176)
 37 >1qtq_A GLNRS, protein (glutam  38.0      24 0.00072   15.0   2.8   43   35-85     25-67  (150)
 38 >3kq5_A Hypothetical cytosolic  35.9      15 0.00043   16.4   1.1   14  418-431    33-46  (70)
 39 >3cdl_A Transcriptional regula  35.8      26 0.00078   14.8   2.7   24  335-358    14-37  (51)
 40 >3fvv_A Uncharacterized protei  34.2      28 0.00082   14.6   4.8   46   61-110    17-62  (156)
 41 >3egq_A TETR family transcript  33.7      22 0.00066   15.2   1.8   24  335-358     9-32  (69)
 42 >2cy7_A Cysteine protease APG4  33.6     6.4 0.00019   18.7  -1.0   23  242-264   313-336 (365)
 43 >3dwl_D Actin-related protein   33.6      14 0.00042   16.5   0.7   15  347-361   162-176 (201)
 44 >1a76_A Flap endonuclease-1 pr  33.1      29 0.00086   14.5   4.2   41   64-108   131-171 (261)
 45 >2rjo_A Twin-arginine transloc  32.0      30 0.00089   14.4   8.5  105   59-164    18-122 (152)
 46 >2iye_A Copper-transporting AT  31.6      31 0.00091   14.4   6.2   79   14-117    10-88  (164)
 47 >3l49_A ABC sugar (ribose) tra  31.3      31 0.00092   14.3   8.3   78   59-139    18-95  (150)
 48 >1rxw_A Flap structure-specifi  31.0      31 0.00093   14.3   4.9   88   36-130    72-163 (268)
 49 >1b43_A Protein (FEN-1); nucle  29.6      33 0.00098   14.2   4.1   12   36-47     72-83  (263)
 50 >1ygr_A CD45 protein tyrosine   29.2      18 0.00052   15.9   0.6   23  328-350    70-93  (130)
 51 >2zvr_A Uncharacterized protei  26.8      37  0.0011   13.9   4.8   43   62-104    40-83  (290)
 52 >1q77_A Hypothetical protein A  26.6      37  0.0011   13.8   8.4  103    5-110     1-117 (138)
 53 >1ub2_A Catalase-peroxidase; K  26.4      23 0.00067   15.2   0.8   32  370-401    22-56  (80)
 54 >8abp_A L-arabinose-binding pr  25.7      39  0.0011   13.7   7.5   78   59-140    15-92  (138)
 55 >3loq_A Universal stress prote  25.0      40  0.0012   13.6   6.2   95   16-112    29-133 (294)
 56 >1nzj_A Hypothetical protein Y  23.1      43  0.0013   13.4   2.3   12   73-84     34-45  (147)
 57 >2zy4_A L-aspartate beta-decar  23.1      15 0.00046   16.3  -0.6   17  321-337    80-98  (144)
 58 >2hc1_A Receptor-type tyrosine  23.0      19 0.00057   15.7  -0.1   40  312-351    41-82  (120)
 59 >2vfr_A Xylitol oxidase, aldit  22.9      20 0.00059   15.6  -0.1   19  414-432    21-39  (42)
 60 >1tq8_A Hypothetical protein R  22.2      45  0.0013   13.3   8.3   84   24-108    32-125 (128)
 61 >2z08_A Universal stress prote  22.2      45  0.0013   13.3   8.2   84   23-110    16-107 (137)
 62 >1zc0_A Tyrosine-protein phosp  22.0      18 0.00053   15.9  -0.4   26  326-351    74-101 (142)
 63 >3fiw_A Putative TETR-family t  21.9      46  0.0014   13.3   2.6   25  334-358    29-53  (88)
 64 >1n62_A Carbon monoxide dehydr  21.7      40  0.0012   13.7   1.3   28  317-344   122-154 (166)
 65 >3ljl_A Transcriptional regula  20.9      43  0.0013   13.4   1.3   24  335-358    19-42  (60)

No 1  
>>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* (A:317-525)
Probab=100.00  E-value=0  Score=495.34  Aligned_cols=203  Identities=32%  Similarity=0.589  Sum_probs=193.7

Q ss_pred             CCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             72001023202468887888633578886153011012000104678998722788868899999999716763589999
Q gi|254781170|r  277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI  356 (483)
Q Consensus       277 ~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~  356 (483)
                      |+++|++||+||||++++++++|++.. .++.+.++.++|+++++.|++|++|+||+|+||||||||++|||||||+|||
T Consensus         2 ~~e~f~~eL~wRe~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~w~~G~TG~p~vDAamr~L~~tG~lhn~~Rm~   80 (209)
T 2j4d_A            2 STYWVLFELIWRDYFRFLSIKCGNSLF-HLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQI   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGT-STTTTTTCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCHHH-HCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             337898999998886689871761232-0222100122212231123432311368818999999999863557799999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCC
Q ss_conf             99999984104700223347766413311147456100201278984702204645898872489978330082432799
Q gi|254781170|r  357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP  436 (483)
Q Consensus       357 vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p  436 (483)
                      ||||||+.|++||+.|++||+++|||||+++|+|||||+||+|+|+.+ +|+|||++|++++||+|+|||+|||||+++|
T Consensus        81 vasfl~~~l~~~w~~g~~~f~~~liD~d~a~n~~~wq~~aG~~~~~~~-~r~~~p~~q~~~~Dp~g~yi~~w~pel~~~p  159 (209)
T 2j4d_A           81 VCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDPEGEYVAFWLQQLRRLP  159 (209)
T ss_dssp             HHHHHHHTSCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSSCGGG-CCCCCHHHHHHHHCTTCHHHHHHSGGGTTSC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHCHHHHHHHHCCCCCCCC-CCCCCHHHHHHHHCCCCCCHHHHCHHHHCCC
T ss_conf             999989871668778999999873686443188887898657889998-5046988999985999756687488753699


Q ss_pred             HHHHCCHHHHHHHCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             778049554013125--789999763189999999999999996400
Q gi|254781170|r  437 TQYIHAPHSWLDKND--LSLNYPLPIVDHKKACHHTLNQYYAAKKQS  481 (483)
Q Consensus       437 ~~~ih~p~~~~~~~~--~~~~YP~pivd~~~~~~~a~~~~~~~~k~~  481 (483)
                      .++||+||.++....  .+.+||.||||++++|++++++|+++|++.
T Consensus       160 ~~~i~~p~~~~~~~~~~~~~~yp~pivd~~~~~~~~~~~~~~~~~~~  206 (209)
T 2j4d_A          160 KEKRHWPGRLMYMDTVVPLKHGNGPMAGGSKSGGGFRGSHSGRRSRH  206 (209)
T ss_dssp             TTTTTSCHHHHTCCCSSCCSCCC------------------------
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHC
T ss_conf             88806976588443415767796233189999999998888887503


No 2  
>>2j07_A Deoxyribodipyrimidine photo-lyase; chromophore, DNA binding protein, flavoprotein, nucleotide- binding, antenna chromophore; HET: FAD HDF; 1.95A {Thermus thermophilus} (A:222-395)
Probab=100.00  E-value=0  Score=448.67  Aligned_cols=174  Identities=44%  Similarity=0.879  Sum_probs=167.5

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCHHHHHHHHHCCCCCC
Q ss_conf             79999999999864311123477200102320246888788863357888615301101200010467899872278886
Q gi|254781170|r  255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP  334 (483)
Q Consensus       255 S~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P  334 (483)
                      |||+|++++.+.       ++++++.|++||+||||++++++++|.... .++.+.++.++|..+++.|++|++|+||+|
T Consensus         1 S~R~v~~~~~~~-------~~~~~~~f~~~L~WRe~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~w~~G~TG~p   72 (174)
T 2j07_A            1 SPRLAAWEAERR-------GGEGARKWVAELLWRDFSYHLLYHFPWMAE-RPLDPRFQAFPWQEDEALFQAWYEGKTGVP   72 (174)
T ss_dssp             CHHHHHHHHHHH-------CSHHHHHHHHHHHHHHHHHHHHHHCGGGGT-SCSSGGGTTCCCCCCHHHHHHHHTTCSSCH
T ss_pred             CHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCHHHHHHHHCCCCCCH
T ss_conf             699999999887-------655544445678899999989886678876-531100133333478788633431667853


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCCCCCCCHHHH
Q ss_conf             88999999997167635899999999998410470022334776641331114745610020127898470220464589
Q gi|254781170|r  335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ  414 (483)
Q Consensus       335 lVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G~d~~~~~Ri~np~~q  414 (483)
                      +||||||||++|||||||+|||||||+|+.|++||++|++||+++|||||+++|++||||+||+|+|+.|++|+|||++|
T Consensus        73 ~iDAamr~L~~tG~lhn~~R~~~asfl~~~l~~~w~~g~~~f~~~liD~d~a~n~~~wq~~ag~~~~~~~~~r~~n~~~~  152 (174)
T 2j07_A           73 LVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQ  152 (174)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSGGGCCTTCCCCHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHCCHHHHHHHHCCCCCCCCCCEEECHHHH
T ss_conf             99999997554357678899999876677503342458999998764876101899988874768889976303489899


Q ss_pred             HHHHCCCCCEEHCCCHHHHCCC
Q ss_conf             8872489978330082432799
Q gi|254781170|r  415 GKRFDPQGTFIRHWLPELNNVP  436 (483)
Q Consensus       415 ~~~~Dp~g~~ir~wvPeL~~~p  436 (483)
                      +++|||+|+|||||||||++|.
T Consensus       153 ~~~~Dp~g~yir~w~PeL~~~s  174 (174)
T 2j07_A          153 GERHDPEGRWLKRWAPEYPSYA  174 (174)
T ss_dssp             HHHHSTTSHHHHHHCTTCSSSS
T ss_pred             HHHHCCCCCCHHHHCCCCCCCC
T ss_conf             9987989754777481123799


No 3  
>>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon; HET: DNA FAD MHF; 2.30A {Escherichia coli} (A:264-426)
Probab=100.00  E-value=0  Score=411.37  Aligned_cols=162  Identities=70%  Similarity=1.368  Sum_probs=156.9

Q ss_pred             CCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf             47720010232024688878886335788861530110120001046789987227888688999999997167635899
Q gi|254781170|r  275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR  354 (483)
Q Consensus       275 ~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~R  354 (483)
                      ++++++|++||+||||++++++++|...............+|+.+++.+++|++|+||+|+||||||||++||||||++|
T Consensus         2 ~~~~e~f~~~L~wRe~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~G~Tg~p~iDA~mr~L~~tG~lhn~~R   81 (163)
T 1dnp_A            2 GGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR   81 (163)
T ss_dssp             TSTTHHHHHHHHHHHHHHHHHHHCGGGGGTCCSSGGGGGSCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf             45413555479888999998874273121143100223200147878887541487897489999998644575006799


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHC
Q ss_conf             99999999841047002233477664133111474561002012789847022046458988724899783300824327
Q gi|254781170|r  355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN  434 (483)
Q Consensus       355 m~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~  434 (483)
                      |+||||||+.|++||+.|++||+++|||+|+|+|++||||+||+|+|+.|++|+|||++|+++|||+|+|||||||||++
T Consensus        82 ~~va~fl~~~l~~~w~~ga~~f~~~liD~d~a~n~~~wq~~~G~~~~~~~~~r~~n~~~~~~~~d~~g~yirr~~pel~~  161 (163)
T 1dnp_A           82 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRD  161 (163)
T ss_dssp             HHHHHHHHHTSCCCHHHHHHHHHTTCTTCCHHHHHHHHHHHTTCSTTCCCTTCCCCHHHHHHHHTTTCHHHHHHCGGGTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHCHHHHC
T ss_conf             99999999852534655399999761168712175877877364888998654168989999869798757773866307


Q ss_pred             CC
Q ss_conf             99
Q gi|254781170|r  435 VP  436 (483)
Q Consensus       435 ~p  436 (483)
                      +|
T Consensus       162 ~P  163 (163)
T 1dnp_A          162 VP  163 (163)
T ss_dssp             SC
T ss_pred             CC
T ss_conf             99


No 4  
>>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} (A:1-259)
Probab=100.00  E-value=0  Score=358.08  Aligned_cols=241  Identities=22%  Similarity=0.293  Sum_probs=203.5

Q ss_pred             EEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             26888358675567789999999579829999973837847888998999999999999999999759809999657535
Q gi|254781170|r    9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD   88 (483)
Q Consensus         9 ~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g   88 (483)
                      ++|||||||||++||+||.+|++.+  +++||||+||.+++....|++|++|+++||.+|+++|+++|++|+++.|+   
T Consensus        13 ~~i~WfrrDlRl~DN~aL~~A~~~~--~~l~v~v~d~~~~~~~~~~~~~~~fl~esL~~L~~~L~~~G~~L~v~~g~---   87 (259)
T 1u3d_A           13 CSIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRST---   87 (259)
T ss_dssp             CEEEEESSCCCSTTCHHHHHHHHHS--CEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECS---
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCC--CEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC---
T ss_conf             5899979996541489999998499--98999997733325899668999999999999999999879967999688---


Q ss_pred             CHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHH-CCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             08999999998709761421001110011001026888752-00000022343455576002378644321014799886
Q gi|254781170|r   89 DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ  167 (483)
Q Consensus        89 ~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~-~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~~  167 (483)
                      .+.++|.+++++++++.|+++.+|++++++||+.|.+.|+. ++.+..++++++++|+.+.+..+.+|++||||+++|..
T Consensus        88 ~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~d~~i~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~f~~f~~~~~~  167 (259)
T 1u3d_A           88 DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLS  167 (259)
T ss_dssp             CHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCCHHHHHCCEEEEECCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             86999999999819988999332160454201011002330580799604643100002345678863025889999986


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCC-CCC---CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
Q ss_conf             315663221245544567766755-575---323476-434554688876433322111111101101202686545666
Q gi|254781170|r  168 NLVQADLRSLPVPAIRLTGPVTPS-NIP---RFFDYP-FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT  242 (483)
Q Consensus       168 ~~~~~~~~~~p~~~~~~~~~~~~~-~~~---~~~~~~-~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~t  242 (483)
                      .....++...+............. ...   ...... .......|+|||.+|+++|++|+++++.+|+++||.|+.++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gge~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~t  247 (259)
T 1u3d_A          168 MPYDPESPLLPPKKIISGDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATT  247 (259)
T ss_dssp             CSSCCCCCCCCCSCCCBTTGGGSSCCCCCCCCHHHHHHHTTHHHHCCCSHHHHHHHHHHHHTTGGGGTTTTTTCSSSTTS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
T ss_conf             31124666564311233443222123444332222573112455257303678876533331122201245431100000


Q ss_pred             CCCCHHHCCCCC
Q ss_conf             544611114648
Q gi|254781170|r  243 SQLSPYLSIGVL  254 (483)
Q Consensus       243 SrLSPyL~~G~I  254 (483)
                      |+|||||+||||
T Consensus       248 S~LSpyL~~G~I  259 (259)
T 1u3d_A          248 SFLSPHLHFGEV  259 (259)
T ss_dssp             CCCHHHHHTTSS
T ss_pred             HCCCCCCCCCCC
T ss_conf             002200132437


No 5  
>>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus pcc 6301} (A:308-448)
Probab=100.00  E-value=0  Score=356.35  Aligned_cols=139  Identities=53%  Similarity=0.989  Sum_probs=134.2

Q ss_pred             HHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCC
Q ss_conf             10120001046789987227888688999999997167635899999999998410470022334776641331114745
Q gi|254781170|r  311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG  390 (483)
Q Consensus       311 ~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~  390 (483)
                      +++++|++|++.+++|++|+||+|+||||||||++|||||||+|||||||||+.|++||+.|++||+++|||||+++|++
T Consensus         2 ~d~~~~~~~~~~~~~w~~G~Tg~p~vDAamrqL~~tG~lh~~~R~~va~~l~~~l~~~w~~g~~~f~~~liD~d~~~~~~   81 (141)
T 1owl_A            2 WQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNG   81 (141)
T ss_dssp             GGGCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCTHHHHHHHHTTCTTCCHHHHHH
T ss_pred             HHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             20378644789999998376897279999999998698458999999999976579888999999998613588667977


Q ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHHC
Q ss_conf             610020127898470220464589887248997833008243279977804955401312
Q gi|254781170|r  391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN  450 (483)
Q Consensus       391 ~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~~  450 (483)
                      +|||+||+|+|+. ++|+|||++|+.++||+|+|||||||||+++|.++||+||+++...
T Consensus        82 ~wq~~aG~~~~~~-~~r~~~~~~~~~~~dp~g~~ir~~~Pel~~l~~~~i~~p~~~~~~~  140 (141)
T 1owl_A           82 GWQWSASSGMDPK-PLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIER  140 (141)
T ss_dssp             HHHHTTTCSSSCC-CCCCCCHHHHHHHHSTTCHHHHHHCGGGTTSCHHHHHHTCCCHHHH
T ss_pred             HHHEEEEECCCCC-CCEEECHHHHHHHHCCCCCCHHHHCHHHCCCCHHHHCCCCCCCCCC
T ss_conf             7633431056999-8631078899998499976177739653279967853902065445


No 6  
>>2e0i_A 432AA long hypothetical deoxyribodipyrimidine photolyase; FAD, DNA repair; HET: FAD; 2.80A {Sulfolobus tokodaii str} (A:268-406)
Probab=100.00  E-value=0  Score=351.63  Aligned_cols=137  Identities=49%  Similarity=0.907  Sum_probs=132.1

Q ss_pred             HHHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCC
Q ss_conf             11012000104678998722788868899999999716763589999999999841047002233477664133111474
Q gi|254781170|r  310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN  389 (483)
Q Consensus       310 ~~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~  389 (483)
                      +++.++|+++++.+++|++|+||+|+||||||||++||||||++|||||||+|+.|++||+.|+.||+++|||||++||+
T Consensus         1 ~~~~r~~~~~~~~~~~w~~G~Tg~p~idAamr~L~~tG~lh~~~R~~va~~~~~~l~~~w~~g~~~f~~~liD~d~~~n~   80 (139)
T 2e0i_A            1 EYDNISWENNESYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVDWRWGERYFATKLVDYDPAINN   80 (139)
T ss_dssp             GGGGCCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHH
T ss_pred             HHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf             20135653698987333269878549999999840304403378899999999973440555699998764138746697


Q ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHH
Q ss_conf             56100201278984702204645898872489978330082432799778049554013
Q gi|254781170|r  390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD  448 (483)
Q Consensus       390 ~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~  448 (483)
                      +||||+||++.++.+  |+|||++|++++||+|+|||+|||||+++|.++||+||.++.
T Consensus        81 ~~wq~~aG~~~~~~~--~~~~~~~~~~~~D~~G~yir~~~pel~~~p~~~i~~p~~~~~  137 (139)
T 2e0i_A           81 GNWQWIASTGVDYMF--RVFNPWKQQEKFDPEAKFIKEWVEELKDVPPSIIHSIYKTKV  137 (139)
T ss_dssp             HHHHHHTTSSSCCSC--CCCCHHHHHHHHCTTCHHHHHHCGGGGGSCHHHHTTTTTSCC
T ss_pred             HHCEEHHCCCCCCCC--EEECHHHHHHHHCCCCCCHHHHCHHHHCCCHHHHCCHHHCCC
T ss_conf             757001057888775--202898999985989751887485733599778479623866


No 7  
>>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} (A:318-446)
Probab=100.00  E-value=0  Score=346.17  Aligned_cols=129  Identities=45%  Similarity=0.933  Sum_probs=126.0

Q ss_pred             HHHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCC
Q ss_conf             11012000104678998722788868899999999716763589999999999841047002233477664133111474
Q gi|254781170|r  310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN  389 (483)
Q Consensus       310 ~~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~  389 (483)
                      +++.++|+++++.+++|++|+||+|+||||||||++||||||++|||||||||+.|++|||+|+.||+++|||||+++|+
T Consensus         1 ~~~~~~~~~~~~~~e~w~~G~Tg~p~idAamrqL~~tG~~h~~~R~~va~~l~~~l~~~w~~g~~~f~~~liD~d~a~n~   80 (129)
T 1u3d_A            1 HLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDA   80 (129)
T ss_dssp             TTTTCCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCH
T ss_conf             00345333687999988500028866999999999851146899999998989871611667678899996536747585


Q ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHH
Q ss_conf             5610020127898470220464589887248997833008243279977
Q gi|254781170|r  390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ  438 (483)
Q Consensus       390 ~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~  438 (483)
                      +||||++|+|+|+.|++|+|||++|++++||+|+|||+|||||+++|.+
T Consensus        81 ~~w~w~~G~~~~~~~~~r~~~~i~~~~~~d~~g~yi~~~~pel~~~P~e  129 (129)
T 1u3d_A           81 LGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTD  129 (129)
T ss_dssp             HHHHHHHTCSTTCCCSSCCCCHHHHHHHHCTTSHHHHHHCGGGTTCCHH
T ss_pred             HHHHHHHCCCCCCCCCCEECCHHHHHHHHCCCCCHHHHHCHHHHCCCHH
T ss_conf             8677362378888883013598899998688975188849241149977


No 8  
>>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} (A:314-441)
Probab=100.00  E-value=0  Score=330.99  Aligned_cols=127  Identities=48%  Similarity=0.936  Sum_probs=122.9

Q ss_pred             HHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCC
Q ss_conf             10120001046789987227888688999999997167635899999999998410470022334776641331114745
Q gi|254781170|r  311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG  390 (483)
Q Consensus       311 ~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~  390 (483)
                      ++.++|++|.+.+++|++|+||+|+||||||||++||||||++|||||||+++.|++|||.|++||+++|||||+++|++
T Consensus         2 ~~~~~~~~~~~~~~~w~~G~Tg~p~idaamr~L~~~G~~H~~~R~~va~~~~~~l~~~w~~g~~~f~~~liD~d~~~~~~   81 (128)
T 1np7_A            2 NKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWG   81 (128)
T ss_dssp             TCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHCTTCCHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHCHH
T ss_conf             43466535545556523489999457999999998788268999999999985678790789999998714765532888


Q ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHH
Q ss_conf             610020127898470220464589887248997833008243279977
Q gi|254781170|r  391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ  438 (483)
Q Consensus       391 ~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~  438 (483)
                      +|||++|+|++..+ +|+|||++|++++||+|+|||+|||||+++|.+
T Consensus        82 ~wq~~~G~~~~~~~-~r~~~~~~~~~~~dp~g~y~~~~~pel~~~P~e  128 (128)
T 1np7_A           82 NWNYTAGIGNDARD-FRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGD  128 (128)
T ss_dssp             HHHHHHTSSCCTTS-CCCCCHHHHHHHHSTTSHHHHHHCGGGTTCCSG
T ss_pred             HHHHHHCCCCCCCC-CEECCHHHHHHHHCCCCCCHHHHCHHHHCCCHH
T ss_conf             77888547889998-611388899998698976578748764169977


No 9  
>>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* (A:347-475)
Probab=100.00  E-value=0  Score=331.41  Aligned_cols=127  Identities=42%  Similarity=0.862  Sum_probs=121.2

Q ss_pred             HHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHCCCHHCCC
Q ss_conf             10120001046789987227888688999999997167635899999999998-41047002233477664133111474
Q gi|254781170|r  311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN  389 (483)
Q Consensus       311 ~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~-~L~idWr~g~~~f~~~llD~d~~~n~  389 (483)
                      .+..+|+++++.+++|++|+||+|+||||||||++|||||||+|||||||+++ .+++|||.|+.||+++|+|||+++|+
T Consensus         2 ~~~~~~~~~~~~~~~w~~G~Tg~p~vdaamr~L~~tG~lh~~~R~~~as~l~~~~~~~~w~~g~~~~~~~l~D~d~a~~~   81 (129)
T 2wq7_A            2 CMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNA   81 (129)
T ss_dssp             CCCCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHCTTCCHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCH
T ss_conf             32257200045778741599998079999999999768418999999999998640888689999999877696711489


Q ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHH
Q ss_conf             5610020127898470220464589887248997833008243279977
Q gi|254781170|r  390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ  438 (483)
Q Consensus       390 ~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~  438 (483)
                      ++|||+||+|.|.. ++|+|||++|+++|||+|+|||||+|||+++|+.
T Consensus        82 ~~wq~~aG~~~~~~-~~r~~n~~~~~~~~d~~g~yi~rw~pel~~~P~~  129 (129)
T 2wq7_A           82 GNWMWLSASAFFHQ-YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAG  129 (129)
T ss_dssp             HHHHHHTTSSSCCC-TTCCCCTTTGGGGTCTTCHHHHHHSGGGTTSCHH
T ss_pred             HHHHHHHCCCCCCC-CCCCCCHHHHHHHHCCCCCCHHHHCHHHHCCCHH
T ss_conf             99999864888998-6722388899998599986617738773269977


No 10 
>>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} (A:323-451)
Probab=100.00  E-value=0  Score=318.78  Aligned_cols=127  Identities=43%  Similarity=0.861  Sum_probs=121.3

Q ss_pred             HHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHCCCHHCCC
Q ss_conf             10120001046789987227888688999999997167635899999999998410-47002233477664133111474
Q gi|254781170|r  311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNN  389 (483)
Q Consensus       311 ~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~-idWr~g~~~f~~~llD~d~~~n~  389 (483)
                      ++..+|+++.+.+++|++|+||+|+||||||||++||||||++|||||||+|+.|. +||+.|++||+++|||||+++|+
T Consensus         2 t~~~~~~~~~~~~~~~~~G~Tg~p~vdaa~r~L~~tG~~h~~~R~~~a~~~~~~l~~~~w~~g~~~f~~~~iD~~~~~n~   81 (129)
T 3fy4_A            2 CKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINN   81 (129)
T ss_dssp             SCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCBCHHHHHHHHHHHCTTCCHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCH
T ss_conf             23454335630012332234688289999999754154242889999999987413887666299988547586703677


Q ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHH
Q ss_conf             5610020127898470220464589887248997833008243279977
Q gi|254781170|r  390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ  438 (483)
Q Consensus       390 ~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~  438 (483)
                      +||||+||+|.|.. ++|+|||++|+++|||+|+|||||+|||+.+|++
T Consensus        82 ~~w~~~aG~~~~~~-~~r~~n~~~~~~~~d~~g~yi~~~~pel~~~P~e  129 (129)
T 3fy4_A           82 GNWMWLSCSSFFYQ-FNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQ  129 (129)
T ss_dssp             HHHHHHTTSSSCCC-TTCCCCTTTTGGGTCTTCHHHHHHCGGGTTCCTT
T ss_pred             HHHHHHHCCCCCCC-CCCCCCHHHHHHHHCCCCCCHHHHCHHHHCCCHH
T ss_conf             87645421478776-5542689899998599975299859664269977


No 11 
>>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus pcc 6301} (A:1-196)
Probab=100.00  E-value=3.6e-38  Score=262.10  Aligned_cols=163  Identities=24%  Similarity=0.366  Sum_probs=153.5

Q ss_pred             CC-EEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             64-26888358675567789999999579829999973837847888998999999999999999999759809999657
Q gi|254781170|r    7 MS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCS   85 (483)
Q Consensus         7 M~-~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~   85 (483)
                      |+ ..|||||||||++||+||.+|++.++ +|+||||+||.+++.+..|.+|.+|+++||.+|+++|+++|++|+++.  
T Consensus         1 M~~~vi~WfrrDLRl~DN~aL~~A~~~~~-~v~~v~v~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~--   77 (196)
T 1owl_A            1 MAAPILFWHRRDLRLSDNIGLAAARAQSA-QLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQ--   77 (196)
T ss_dssp             --CCEEEEESSCCCSSSCHHHHHHHHHCS-CEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEE--
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE--
T ss_conf             99878999789853505899999996699-799999987667518997899999999999999999997899579999--


Q ss_pred             CCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHH-CCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             53508999999998709761421001110011001026888752-00000022343455576002378644321014799
Q gi|254781170|r   86 NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA  164 (483)
Q Consensus        86 ~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~-~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~  164 (483)
                        |++.++|.+++++++|+.|++|++|+++++++|..|++.|+. ++.+..+++++|++|+.+.++.+.+|+|||||+|+
T Consensus        78 --g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~i~~~l~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~vftpf~k~  155 (196)
T 1owl_A           78 --GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKN  155 (196)
T ss_dssp             --SCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHH
T ss_pred             --ECHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCEEECCCCCCCCCCCHHHHH
T ss_conf             --478999999999849988999601464045666554333311583001035652026762133799975322188999


Q ss_pred             HHHHCCCCCC
Q ss_conf             8863156632
Q gi|254781170|r  165 LIQNLVQADL  174 (483)
Q Consensus       165 ~~~~~~~~~~  174 (483)
                      |.+...+.+.
T Consensus       156 ~~~~~~~~~~  165 (196)
T 1owl_A          156 WQAQPKPTPV  165 (196)
T ss_dssp             HHHSCCCCCC
T ss_pred             HHHCCCCCCC
T ss_conf             9855555666


No 12 
>>2j07_A Deoxyribodipyrimidine photo-lyase; chromophore, DNA binding protein, flavoprotein, nucleotide- binding, antenna chromophore; HET: FAD HDF; 1.95A {Thermus thermophilus} (A:1-149)
Probab=100.00  E-value=4.5e-34  Score=235.99  Aligned_cols=148  Identities=19%  Similarity=0.274  Sum_probs=135.8

Q ss_pred             CCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             64268883586755677899999995798299999738378478889989999999999999999997598099996575
Q gi|254781170|r    7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN   86 (483)
Q Consensus         7 M~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~   86 (483)
                      |++.|||||||||++||+||.+|++.  +++++|||++|.++   +.|++|.+|++|||.+|+++|+++|++|+++.   
T Consensus         1 m~~~i~Wfr~DLRl~DN~aL~~A~~~--~~~i~v~~~~~~~~---~~~~~r~~Fl~esl~~L~~~L~~~g~~L~v~~---   72 (149)
T 2j07_A            1 MGPLLVWHRGDLRLHDHPALLEALAR--GPVVGLVVLDPNNL---KTTPRRRAWFLENVRALREAYRARGGALWVLE---   72 (149)
T ss_dssp             -CCEEEEESSCCCSTTCHHHHHHHTT--SCEEEEEEECHHHH---SSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE---
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCC--CCEEEEEEECCCCC---CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE---
T ss_conf             99889998998534136999999847--99899999867332---34999999999999999999996899779999---


Q ss_pred             CCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             35089999999987097614210011100110010268887520000002234345557600237864432101479988
Q gi|254781170|r   87 FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI  166 (483)
Q Consensus        87 ~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~  166 (483)
                       |++.++|.+++++++|+.||+|++|++++.++|+.|++.|+..       +.++++|+.++++.+++|++||||+|+|.
T Consensus        73 -g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~~~~i~~~l~~~-------~~~l~~~~~i~~~~~~~~~vft~F~k~~~  144 (149)
T 2j07_A           73 -GLPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREALPVP-------LHLLPAPHLLPPDLPRAYRVYTPFSRLYR  144 (149)
T ss_dssp             -SCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHCSSC-------EEEECCCCSSCTTCSSCCSSHHHHHTTCC
T ss_pred             -ECHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHCC-------CEEECCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf             -6879999999997411012203100013556677776654301-------11211120353026885323227888876


Q ss_pred             HHCC
Q ss_conf             6315
Q gi|254781170|r  167 QNLV  170 (483)
Q Consensus       167 ~~~~  170 (483)
                      +.+.
T Consensus       145 ~~l~  148 (149)
T 2j07_A          145 GAAP  148 (149)
T ss_dssp             CCCC
T ss_pred             HCCC
T ss_conf             4137


No 13 
>>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon; HET: DNA FAD MHF; 2.30A {Escherichia coli} (A:1-140)
Probab=99.97  E-value=1.3e-31  Score=220.38  Aligned_cols=140  Identities=49%  Similarity=0.880  Sum_probs=132.0

Q ss_pred             CEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             42688835867556778999999957982999997383784788899899999999999999999975980999965753
Q gi|254781170|r    8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF   87 (483)
Q Consensus         8 ~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~   87 (483)
                      |++|||||||||++||+||.+|++.++.+++||||++|.+++.+..|++|++|+++||.+|+++|+++|++|+++.|...
T Consensus         1 s~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~g~~~   80 (140)
T 1dnp_A            1 TTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDF   80 (140)
T ss_dssp             CEEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSH
T ss_pred             CCEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             94899828985444589999999749996899999872564489968999999999999999999977996799976754


Q ss_pred             CCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHHCCCCEECCCCCCCCCCCCC
Q ss_conf             5089999999987097614210011100110010268887520000002234345557600
Q gi|254781170|r   88 DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL  148 (483)
Q Consensus        88 g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~~~~~~~~~~~~l~~p~~i~  148 (483)
                      ++..++|.+++++++|+.||+|++|++++++||..+++.++ ++.+..+++++|++|++|.
T Consensus        81 ~~~~~~l~~l~~~~~i~~V~~~~~~~~~~~~~d~~i~~~l~-~i~~~~~~~~~L~~~~~i~  140 (140)
T 1dnp_A           81 VASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALR-NVVCEGFDDSVILPPGAVM  140 (140)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCT-TSEEEEECCSSSSCTTSSC
T ss_pred             CCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHC-CCCEEECCCCEEEEECEEC
T ss_conf             26899999999983970899832432145568999998742-6845634882785302010


No 14 
>>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} (A:1-146)
Probab=99.97  E-value=6.2e-31  Score=216.05  Aligned_cols=140  Identities=25%  Similarity=0.373  Sum_probs=127.5

Q ss_pred             CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCC-----CCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99888864268883586755677899999995798299999738378478-----8899899999999999999999975
Q gi|254781170|r    1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLLQVQKSLSQK   75 (483)
Q Consensus         1 m~~~~~M~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~-----~~~~~~~~~Fl~esL~~L~~~L~~~   75 (483)
                      |++..  ...|||||||||++||+||.+|++.++ +++||||+||.++..     ...|++|.+|++|||.+|+++|+++
T Consensus         1 m~~~~--~~vl~WfrrDLRl~DN~aL~~A~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~   77 (146)
T 1np7_A            1 MKHVP--PTVLVWFRNDLRLHDHEPLHRALKSGL-AITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKV   77 (146)
T ss_dssp             CCCCC--CEEEEEESSCCCSTTCHHHHHHHHTTS-EEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCC--CCEEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEEECHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99899--988998389853747899999995799-299999987378504574422024999999999999999999977


Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCC
Q ss_conf             98099996575350899999999870976142100111001100102688875-2000000223434555760
Q gi|254781170|r   76 GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSI  147 (483)
Q Consensus        76 g~~L~v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i  147 (483)
                      |++|+++.    |++.++|.+++++++|+.||+|.+|+++++++|+.|.+.|+ .++.+..+++++|++|++|
T Consensus        78 g~~L~v~~----g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~d~~i~~~l~~~gi~~~~~~~~~l~~~~~i  146 (146)
T 1np7_A           78 GNKLLVTT----GLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDL  146 (146)
T ss_dssp             TCCEEEEE----SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGS
T ss_pred             CCCEEEEE----CCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf             99669997----8999999999998599689993664640144679999988741732012332123576413


No 15 
>>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* (A:34-183)
Probab=99.97  E-value=1.8e-30  Score=213.10  Aligned_cols=141  Identities=23%  Similarity=0.399  Sum_probs=126.1

Q ss_pred             CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99888864268883586755677899999995798299999738378478------889989999999999999999997
Q gi|254781170|r    1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQSHFIYASLLQVQKSLSQ   74 (483)
Q Consensus         1 m~~~~~M~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~------~~~~~~~~~Fl~esL~~L~~~L~~   74 (483)
                      |+.+.+ .+.|||||||||++||+||.+|++.++ +++||||+||.++..      +..|++|.+|+++||.+|+++|++
T Consensus         1 ~~~~~~-~~~l~Wfr~DLRl~DN~aL~~A~~~~~-~~~~vyv~~p~~~~~~~~~~~~~~~~~r~~fl~~sL~~L~~~L~~   78 (150)
T 2j4d_A            1 VKRKGK-GVTILWFRNDLRVLDNDALYKAWSSSD-TILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMK   78 (150)
T ss_dssp             CCCTTC-CEEEEEESSCCCSTTCHHHHHHHHTCS-EEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCC-CEEEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             105899-418999899843515799999996499-799999985457344432358775799999999999999999997


Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHH-CC--CCEECCCCCCCCCCCC
Q ss_conf             5980999965753508999999998709761421001110011001026888752-00--0000223434555760
Q gi|254781170|r   75 KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RV--ICKSFDDSVLLPPGSI  147 (483)
Q Consensus        75 ~g~~L~v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~-~~--~~~~~~~~~l~~p~~i  147 (483)
                      +|++|+++.    |++.+++.+++++++|+.||+|.+++++++++|.+|.+.|+. ++  .+.++++++|++|+++
T Consensus        79 ~g~~L~v~~----g~~~~~~~~l~~~~~i~~V~~~~~~~~~~~~~d~~i~~~l~~~gi~v~~~~~~~~~l~~p~~l  150 (150)
T 2j4d_A           79 RGLNLLIRS----GKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDL  150 (150)
T ss_dssp             TTCCCEEEE----SCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCSSCEEEEECCSCSSCGGGS
T ss_pred             CCCCEEEEE----CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEECCC
T ss_conf             799679998----988999999999678758982465677999999999999876236554201057501210222


No 16 
>>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} (A:147-313)
Probab=99.97  E-value=1.5e-31  Score=219.93  Aligned_cols=150  Identities=22%  Similarity=0.338  Sum_probs=110.9

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCCCCC---CCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86443210147998863156632212455445677667--5557532---3476-4345546888764333221111111
Q gi|254781170|r  152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT--PSNIPRF---FDYP-FQAIDPMFPIGEQNALHILRKFCKE  225 (483)
Q Consensus       152 ~~~~~vftpf~k~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~---~~~~-~~~~~~~~~gGe~~A~~~L~~Fl~~  225 (483)
                      .++|+|||||+++|.+...+... ..+.+.........  ...+...   ...+ .......|+|||++|+++|++||++
T Consensus         5 ~~~y~vftpf~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~   83 (167)
T 1np7_A            5 QDLPDLFTKFRKDIEKKKISIRP-CFFAPSQLLPSPNIKLELTAPPPEFFPQINFDHRSVLAFQGGETAGLARLQDYFWH   83 (167)
T ss_dssp             GGCCSSHHHHHHHHHTTTCCCCC-CCCCCSCCCCCCCCCCCCCCCCGGGSCCCCCCTTSSCCCCCSHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             88764100889999862134565-54542014776444312367843444322544343324686346787754444320


Q ss_pred             C--CCHHHHCCC-CCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             0--110120268-6545666544611114648799999999998643111234772001023202468887888633578
Q gi|254781170|r  226 K--VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC  302 (483)
Q Consensus       226 ~--l~~Y~~~Rn-~p~~~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~  302 (483)
                      +  +.+|...|| .|+.++||+|||||+|||||+|+|++++.+....  ....++.++|++||+|||||+++++++|++.
T Consensus        84 ~~~~~~y~~~r~~~p~~~~tS~LSpyL~fG~iS~r~v~~~~~~~~~~--~~~~~~~~~f~~eL~wRef~~~~~~~~P~~~  161 (167)
T 1np7_A           84 GDRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQE--RVSNDSTHWLIFELLWRDFFRFVAQKYGNKL  161 (167)
T ss_dssp             SCCGGGHHHHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             CCCCCCHHHHCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             12213554410465334554325977717867899999999998631--1234305889877999999999998674188


Q ss_pred             HH
Q ss_conf             88
Q gi|254781170|r  303 MG  304 (483)
Q Consensus       303 ~~  304 (483)
                      +.
T Consensus       162 ~~  163 (167)
T 1np7_A          162 FN  163 (167)
T ss_dssp             GS
T ss_pred             HH
T ss_conf             76


No 17 
>>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} (A:1-142)
Probab=99.97  E-value=1.9e-29  Score=206.63  Aligned_cols=128  Identities=22%  Similarity=0.251  Sum_probs=118.3

Q ss_pred             CEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHC---------CCCCCHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf             426888358675567789999999579829999973837847---------88899899999999999999999975980
Q gi|254781170|r    8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR---------QHGISARQSHFIYASLLQVQKSLSQKGIV   78 (483)
Q Consensus         8 ~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~---------~~~~~~~~~~Fl~esL~~L~~~L~~~g~~   78 (483)
                      .++|||||||||++||+||.+|++.++ +|+||||+||.++.         .+..|++|.+|++|||.+|+++|+++|++
T Consensus         5 ~~~i~WfrrDLRi~DN~aL~~A~~~~~-~v~~vyv~~~~~~~~~~~~~~~~~~~~g~~~~~Fl~esL~~L~~~L~~~g~~   83 (142)
T 3fy4_A            5 SGSLIWFRKGLRVHDNPALEYASKGSE-FMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSR   83 (142)
T ss_dssp             CEEEEEESSCCCSTTCHHHHHHHTTCS-CEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHCCCC-EEEEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             988999789865516899999980799-1999999864784446321344565436999999999999999999988994


Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHH-CCCCEECCCCC
Q ss_conf             999965753508999999998709761421001110011001026888752-00000022343
Q gi|254781170|r   79 FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSV  140 (483)
Q Consensus        79 L~v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~-~~~~~~~~~~~  140 (483)
                      |+++.    |++.++|++++++++|+.||+|++|+++++++|..|.+.|+. ++.++++++++
T Consensus        84 L~v~~----g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~i~~~l~~~~I~~~~~~~ht  142 (142)
T 3fy4_A           84 LLVFK----GEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHT  142 (142)
T ss_dssp             CEEEE----SCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSS
T ss_pred             EEEEE----CCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             79997----888999999999759998999613578999998876666652388532233321


No 18 
>>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* (A:1-163)
Probab=99.96  E-value=7e-29  Score=202.96  Aligned_cols=131  Identities=21%  Similarity=0.254  Sum_probs=121.3

Q ss_pred             CCCEEEEEECCCCCCCCCHHHHHHHHHCCC-----CEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             864268883586755677899999995798-----299999738378478889989999999999999999997598099
Q gi|254781170|r    6 AMSVHLVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ   80 (483)
Q Consensus         6 ~M~~~IvWfRrDLRl~DN~aL~~A~~~~~~-----~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~   80 (483)
                      .++..|||||||||++||+||.+|++.++.     .|+|+||+||.+++.+..|++|.+|+++||.+|+++|+++|++|+
T Consensus        27 ~~~~~l~Wfr~DLRi~DN~aL~~A~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~  106 (163)
T 2wq7_A           27 QRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLF  106 (163)
T ss_dssp             TCEEEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSCHHHHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             99838987899965615799999999733046897399999989143246887889999999999999999997799879


Q ss_pred             EEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHH-CCCCEECCCCC
Q ss_conf             9965753508999999998709761421001110011001026888752-00000022343
Q gi|254781170|r   81 YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSV  140 (483)
Q Consensus        81 v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~-~~~~~~~~~~~  140 (483)
                      ++.    |++.++|.+++++++|+.||+|++|+++++++|+.|.+.|+. ++.++++++++
T Consensus       107 v~~----g~~~~~l~~l~~~~~i~~V~~~~~~~~~~~~~d~~i~~~l~~~~i~~~~~~~ht  163 (163)
T 2wq7_A          107 VVR----GKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHT  163 (163)
T ss_dssp             EEE----SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSS
T ss_pred             EEE----CCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCE
T ss_conf             997----899999999999769978999513579999999999999875487579968987


No 19 
>>2e0i_A 432AA long hypothetical deoxyribodipyrimidine photolyase; FAD, DNA repair; HET: FAD; 2.80A {Sulfolobus tokodaii str} (A:133-267)
Probab=99.96  E-value=2.1e-30  Score=212.67  Aligned_cols=133  Identities=26%  Similarity=0.389  Sum_probs=105.6

Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             7864432101479988631566322124554456776675557532347643-455468887643332211111110110
Q gi|254781170|r  151 ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYY  229 (483)
Q Consensus       151 ~~~~~~vftpf~k~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gGe~~A~~~L~~Fl~~~l~~  229 (483)
                      +|++|+|||||+|+|.+...+.+....+..      ......++.+.+.+.. .....++|||++|+++|++|+      
T Consensus         1 sG~~y~vftpf~k~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl------   68 (135)
T 2e0i_A            1 SLFHHRNFTSFYNEVSKVKVREPETMEGSF------DVTDSSMNVDFLLTFKKIESPLFRGGRREGLYLLHRNV------   68 (135)
T ss_dssp             GGCCCSSHHHHHHHHTTSCCCCCCCCCCCB------CCCSSSBCGGGGGGTCCCCCTTCCCSHHHHHHHHTCCC------
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCC------CCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH------
T ss_conf             332221003888988752025741133445------65411110010232134577423079999999987532------


Q ss_pred             HHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             1202686545666544611114648799999999998643111234772001023202468887888633578886153
Q gi|254781170|r  230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI  308 (483)
Q Consensus       230 Y~~~Rn~p~~~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~  308 (483)
                      |+..||+|+.++||+|||||+|||||+|+||++++            +.++|++||+|||||+++++++|++.. .+++
T Consensus        69 y~~~r~~p~~~~tS~LSpyL~~G~iS~r~v~~~~~------------~~~~fi~eL~WRef~~~~~~~~P~~~~-~~~~  134 (135)
T 2e0i_A           69 DFRRRDYPAENNNYRLSPHLKFGTISMREAYYTQK------------GKEEFVRELYWRDFFTLLAYYNPHVFG-HCYR  134 (135)
T ss_dssp             CGGGTTCTTTTCCCCCHHHHHTTSSCHHHHHHHST------------TCHHHHHHHHHHHHHHHHHHHCGGGTT-SCSS
T ss_pred             HHCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHCCCHHH-CCCH
T ss_conf             30258987400210213020027666999988621------------268788888878999999996882032-0210


No 20 
>>2e0i_A 432AA long hypothetical deoxyribodipyrimidine photolyase; FAD, DNA repair; HET: FAD; 2.80A {Sulfolobus tokodaii str} (A:1-132)
Probab=99.96  E-value=6.1e-28  Score=197.00  Aligned_cols=129  Identities=27%  Similarity=0.432  Sum_probs=117.6

Q ss_pred             CCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             642688835867556778999999957982999997383784788-8998999999999999999999759809999657
Q gi|254781170|r    7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCS   85 (483)
Q Consensus         7 M~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~-~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~   85 (483)
                      |++ |||||||||++||+||.+|++.++ +++|+||++|.++... ..|++|.+|++|||.+|+++|+++|++|+++.  
T Consensus         1 M~~-l~Wfr~DLRl~DN~aL~~A~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~gi~L~v~~--   76 (132)
T 2e0i_A            1 MDC-IFIFRRDLRLEDNTGLNYALSECD-RVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDELRKKGSRLNVFF--   76 (132)
T ss_dssp             CEE-EEEESSCCCSSSCHHHHHHHHHSS-EEEEEEEECHHHHSSCTTCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEE--
T ss_pred             CCE-EEEECCCCCHHHHHHHHHHHHCCC-CEEEEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE--
T ss_conf             988-999689854606899999996699-7999999871887329865899999999999999999997799679997--


Q ss_pred             CCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCC
Q ss_conf             5350899999999870976142100111001100102688875-200000022343455
Q gi|254781170|r   86 NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLP  143 (483)
Q Consensus        86 ~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~  143 (483)
                        |++.+++.+++++.  +.|+++++++|+++.||+.|++.|+ .++.+.++++++|+|
T Consensus        77 --g~~~~~l~~l~~~~--~~v~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~~l~p  131 (132)
T 2e0i_A           77 --GEAEKVVSRFFNKV--DAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAYEDYLLTP  131 (132)
T ss_dssp             --SCHHHHHHHHCTTC--SEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSC
T ss_pred             --CCHHHHHHHHHHHH--HCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCC
T ss_conf             --89999999999862--12344567784156699999999986288602136766777


No 21 
>>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus pcc 6301} (A:197-307)
Probab=99.92  E-value=1e-26  Score=189.28  Aligned_cols=103  Identities=33%  Similarity=0.590  Sum_probs=90.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCC-CCCCCCHHHCC
Q ss_conf             54688876433322111111101101202686545666544611114648799999999998643111-23477200102
Q gi|254781170|r  205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLN  283 (483)
Q Consensus       205 ~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~~-~~~~~~~~fl~  283 (483)
                      ...|+|||++|+++|++||++++..|.+.||.|+.++||+|||||+||+||||+|++++.+...+... ...+++++|++
T Consensus         7 ~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~r~~p~~~~tS~LSpyL~~G~iS~r~v~~~~~~~~~~~~~~~~~~~~~~fi~   86 (111)
T 1owl_A            7 GFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQ   86 (111)
T ss_dssp             CCSSCSSHHHHHHHHHHHHHTGGGGHHHHTTCTTSCCSCCCHHHHHTTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             78879629999999999877787631000368666775643854427745599999999998644211221035899999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             3202468887888633578886153
Q gi|254781170|r  284 ELIWREFYRHLMAFYPSVCMGKPFI  308 (483)
Q Consensus       284 eL~WRef~~~~~~~~P~~~~~~~~~  308 (483)
                      ||+|||||+++++++|++.. .+|+
T Consensus        87 eL~WRef~~~~~~~~p~~~~-~~~~  110 (111)
T 1owl_A           87 ELAWREFYQHALYHFPSLAD-GPYR  110 (111)
T ss_dssp             HHHHHHHHHHHHHHCGGGGG-SCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHH-HHCC
T ss_conf             99989999878750840544-3202


No 22 
>>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* (A:1-33,A:184-316)
Probab=99.90  E-value=7e-24  Score=171.16  Aligned_cols=129  Identities=19%  Similarity=0.254  Sum_probs=101.9

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCC
Q ss_conf             5557600237864432101479988631566322124554456776675557532347643----455468887643332
Q gi|254781170|r  142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ----AIDPMFPIGEQNALH  217 (483)
Q Consensus       142 ~~p~~i~~~~~~~~~vftpf~k~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~gGe~~A~~  217 (483)
                      ++...-+++.|++|+|||||+++|.+......+...|.+............++.+.+.+..    .....|+|||++|++
T Consensus        28 ~~~~~~~~~~g~~y~vfTpF~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~gGe~~A~~  107 (166)
T 2j4d_A           28 LPSSSSPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVG  107 (166)
T ss_dssp             CSCCTTSSCGGGCCSSHHHHHHHHHHHCCCCCCCCBCSCCCCCCCCSCCCCCCCTTTTTCCCCCCCSEEEECCSHHHHHH
T ss_pred             CCCCHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             87750245457753100467777775303455410013457766632000001055405564223443346755677765


Q ss_pred             CCCCCCCCCCC--HHHHCCCC-CCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             21111111011--01202686-5456665446111146487999999999986431
Q gi|254781170|r  218 ILRKFCKEKVY--YYVEQRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL  270 (483)
Q Consensus       218 ~L~~Fl~~~l~--~Y~~~Rn~-p~~~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~  270 (483)
                      +|++||++++.  +|.+.|+. |+.++||+|||||+|||||||+||+++.+...+.
T Consensus       108 ~L~~Fl~~~l~~y~y~~~r~~~~~~~~tS~LSPYL~fG~ISpR~v~~~~~~~~~~~  163 (166)
T 2j4d_A          108 RVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKER  163 (166)
T ss_dssp             HHHHHHTTSCCGGGHHHHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHC
T ss_conf             44555653122011101135777766314577642100147999999999876520


No 23 
>>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} (A:196-290)
Probab=99.71  E-value=3.3e-18  Score=135.04  Aligned_cols=78  Identities=29%  Similarity=0.443  Sum_probs=64.2

Q ss_pred             CCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHCCCCCC---CCCCCCCCHHHCCCCCCHHHHHHHH
Q ss_conf             7532347643----455468887643332211111110--110120268654---5666544611114648799999999
Q gi|254781170|r  193 IPRFFDYPFQ----AIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPA---IQGTSQLSPYLSIGVLSPRQCWNRL  263 (483)
Q Consensus       193 ~~~~~~~~~~----~~~~~~~gGe~~A~~~L~~Fl~~~--l~~Y~~~Rn~p~---~~~tSrLSPyL~~G~IS~R~v~~~~  263 (483)
                      +|.+.+++..    .....|+|||.+|+++|++|+.++  +.+|.+.||.|+   .++||+|||||+|||||||+||+++
T Consensus         4 iP~l~~l~~~~~~~~~~~~~~gGe~~A~~rL~~Fl~~~~~~~~Y~~~R~~p~~~~~~~tS~LSpyL~~G~IS~r~~~~~~   83 (95)
T 3fy4_A            4 VPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCL   83 (95)
T ss_dssp             CCCTTTTTCCGGGSSCCCSCCCSHHHHHHHHHHHTCCHHHHHTCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHH
T ss_pred             CCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             44355506765332334767761556666666665555456654101357543357887510022566656699999999


Q ss_pred             HHHHHHH
Q ss_conf             9986431
Q gi|254781170|r  264 KEEFVDL  270 (483)
Q Consensus       264 ~~~~~~~  270 (483)
                      .+...+.
T Consensus        84 ~~~~~~~   90 (95)
T 3fy4_A           84 QNIYKDV   90 (95)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
T ss_conf             9987751


No 24 
>>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon; HET: DNA FAD MHF; 2.30A {Escherichia coli} (A:184-263)
Probab=99.71  E-value=3.2e-18  Score=135.15  Aligned_cols=68  Identities=44%  Similarity=0.693  Sum_probs=62.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf             34554688876433322111111101101202686545666544611114648799999999998643
Q gi|254781170|r  202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD  269 (483)
Q Consensus       202 ~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~  269 (483)
                      ......|+|||++|+++|+.|+++++.+|.++||.|+.++||+|||||+|||||||+||+++.+.+.+
T Consensus        11 ~~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~rd~p~~~~tS~LSpyL~~G~iS~r~v~~~~~~~~~~   78 (80)
T 1dnp_A           11 SFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQ   78 (80)
T ss_dssp             CCCTTTSCCSHHHHHHHHHHHHHTHHHHHHHHTTCTTSCCSCCCHHHHHHTSSCHHHHHHHHHHHCGG
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             32111222456889999999998410456664022124776654012345455642234655654010


No 25 
>>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* (A:220-313)
Probab=99.69  E-value=4.9e-18  Score=133.95  Aligned_cols=79  Identities=29%  Similarity=0.365  Sum_probs=65.1

Q ss_pred             CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHCCCCCC--CCCCCCCCHHHCCCCCCHHHHHHHH
Q ss_conf             55753234764---3455468887643332211111110--110120268654--5666544611114648799999999
Q gi|254781170|r  191 SNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRL  263 (483)
Q Consensus       191 ~~~~~~~~~~~---~~~~~~~~gGe~~A~~~L~~Fl~~~--l~~Y~~~Rn~p~--~~~tSrLSPyL~~G~IS~R~v~~~~  263 (483)
                      ..+|.+.++++   ......|+|||.+|+++|+.||+++  +.+|.+.||+|+  .++||+|||||+|||||||+||+++
T Consensus         4 ~~~P~l~~l~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y~~~R~~p~~~~~~tS~LSpyL~~G~IS~R~v~~~~   83 (94)
T 2wq7_A            4 YDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKL   83 (94)
T ss_dssp             TSCCCHHHHCSCGGGCCCCCSCCSHHHHHHHHHHHHTCHHHHHHCCGGGSCSSCSSCSSCCCHHHHHHTSSCHHHHHHHH
T ss_pred             CCCCCHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHH
T ss_conf             46866877432823206544885599999999999964112210146787645566785436887727877799999999


Q ss_pred             HHHHHH
Q ss_conf             998643
Q gi|254781170|r  264 KEEFVD  269 (483)
Q Consensus       264 ~~~~~~  269 (483)
                      ++...+
T Consensus        84 ~~~~~~   89 (94)
T 2wq7_A           84 KEIIKR   89 (94)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999862


No 26 
>>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} (A:452-537)
Probab=99.08  E-value=9.2e-11  Score=87.70  Aligned_cols=44  Identities=23%  Similarity=0.233  Sum_probs=39.0

Q ss_pred             HHCCHHHHHH------HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             8049554013------1257899997631899999999999999964007
Q gi|254781170|r  439 YIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL  482 (483)
Q Consensus       439 ~ih~p~~~~~------~~~~~~~YP~pivd~~~~~~~a~~~~~~~~k~~~  482 (483)
                      |||+||+++.      .+.||.|||.|||||+++|+.|+++|+++|+.+.
T Consensus         1 yIhePW~~~~~~q~~~g~~lG~dYP~PiVD~~~a~~~a~~~~~~~~~~~~   50 (86)
T 3fy4_A            1 YIYEPWTAPLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEAYALNK   50 (86)
T ss_dssp             TTTCGGGSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             83690339989998749866899970229789999999999999999752


No 27 
>>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* (A:164-219,A:314-346)
Probab=93.09  E-value=0.025  Score=33.98  Aligned_cols=23  Identities=39%  Similarity=0.753  Sum_probs=17.8

Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             01023202468887888633578
Q gi|254781170|r  280 SWLNELIWREFYRHLMAFYPSVC  302 (483)
Q Consensus       280 ~fl~eL~WRef~~~~~~~~P~~~  302 (483)
                      +...||+|||||+-.....|+..
T Consensus        61 sl~gQllWREffyt~a~~~pnfd   83 (89)
T 2wq7_A           61 SLIGQLMWREFYYTVAAAEPNFD   83 (89)
T ss_dssp             SHHHHHHHHHHHHHHHHTCTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             99999999999999998587376


No 28 
>>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} (A:143-195,A:291-322)
Probab=90.26  E-value=0.1  Score=30.16  Aligned_cols=25  Identities=32%  Similarity=0.551  Sum_probs=18.9

Q ss_pred             CHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             2001023202468887888633578
Q gi|254781170|r  278 AFSWLNELIWREFYRHLMAFYPSVC  302 (483)
Q Consensus       278 ~~~fl~eL~WRef~~~~~~~~P~~~  302 (483)
                      ..+...||+|||||+-.....|+..
T Consensus        55 PvSL~GQLLWREFFYt~a~~nPNFD   79 (85)
T 3fy4_A           55 PVSLLGQLLWREFFYTTAFGTPNFD   79 (85)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTCTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7999999988777877654321122


No 29 
>>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.97A {Archaeoglobus fulgidus} (A:)
Probab=67.58  E-value=7.9  Score=18.11  Aligned_cols=82  Identities=9%  Similarity=-0.035  Sum_probs=60.6

Q ss_pred             HHHHHHH---HHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             8999999---9579829999973837847888998999999999999999999759809999657535089999999987
Q gi|254781170|r   24 KALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ  100 (483)
Q Consensus        24 ~aL~~A~---~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g~~~~~L~~l~~~  100 (483)
                      .+|..|+   +..+..+..++|.++..    ...........+-++++.+.+++.|....+......|++.+.+.+.+++
T Consensus        40 ~~l~~a~~la~~~~~~l~~l~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  115 (155)
T 3dlo_A           40 RVLRFAAEEARLRGVPVYVVHSLPGGG----RTKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADE  115 (155)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEEECCST----TSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEEEECCCC----CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf             999999999986599499999860588----8866779999999999999999719997899999348989999999997


Q ss_pred             CCCCCEEEE
Q ss_conf             097614210
Q gi|254781170|r  101 QRVTKLFYN  109 (483)
Q Consensus       101 ~~i~~v~~n  109 (483)
                      .+++-|+.-
T Consensus       116 ~~~dliv~G  124 (155)
T 3dlo_A          116 VDAIAIVIG  124 (155)
T ss_dssp             TTCSEEEEE
T ss_pred             CCCCEEEEE
T ss_conf             399899983


No 30 
>>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I (A:1-43,A:166-287)
Probab=54.09  E-value=14  Score=16.61  Aligned_cols=68  Identities=16%  Similarity=0.109  Sum_probs=47.1

Q ss_pred             CCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             67789999999579829999973837847888998999999999999999999759809999657535089999999987
Q gi|254781170|r   21 TDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ  100 (483)
Q Consensus        21 ~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g~~~~~L~~l~~~  100 (483)
                      .+-.+|..|.+- + .|    |||..     +.        ++...+.=+.|++.|+.+.+..    ||.......++++
T Consensus        21 ~~~~~~~~~~~~-~-~~----~~~~~-----~~--------~~da~e~I~~Lr~~Gi~v~ilT----GD~~~ta~~iA~~   77 (165)
T 3a1c_A           21 KNADALEVAEKV-T-AV----IFDKT-----GT--------LESAKPAVQELKRMGIKVGMIT----GDNWRSAEAISRE   77 (165)
T ss_dssp             CSTTHHHHHHHC-C-EE----EEECC-----CC--------CTTHHHHHHHHHHTTCEEEEEC----SSCHHHHHHHHHH
T ss_pred             CCCHHHHHHCCC-C-EE----EEECC-----CC--------CCCHHHHHHHHHHCCCCEEEEC----CCCHHHHHHHHHH
T ss_conf             794999986499-9-99----99388-----31--------3159999999987699789975----8977999999986


Q ss_pred             CCCCCEEEECC
Q ss_conf             09761421001
Q gi|254781170|r  101 QRVTKLFYNRQ  111 (483)
Q Consensus       101 ~~i~~v~~n~~  111 (483)
                      .+|..||.+-.
T Consensus        78 lGI~~v~a~~~   88 (165)
T 3a1c_A           78 LNLDLVIAEVL   88 (165)
T ss_dssp             HTCSEEECSCC
T ss_pred             CCCCEEEEECC
T ss_conf             49745864228


No 31 
>>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria} (A:)
Probab=52.75  E-value=3.2  Score=20.59  Aligned_cols=21  Identities=19%  Similarity=0.586  Sum_probs=13.6

Q ss_pred             HHHHCCCCCEEHCCCHHHHCC
Q ss_conf             887248997833008243279
Q gi|254781170|r  415 GKRFDPQGTFIRHWLPELNNV  435 (483)
Q Consensus       415 ~~~~Dp~g~~ir~wvPeL~~~  435 (483)
                      ..+|||+|+|.+++--.|+.+
T Consensus        87 ~~kYDP~g~y~~k~~~~~~~~  107 (109)
T 2gvs_A           87 KAKYDPDGTYSKKYEDREKEL  107 (109)
T ss_dssp             HHHHCTTCTTTHHHHTTTCCS
T ss_pred             HHHHCCCCHHHHHHHHHHHHH
T ss_conf             998796956999999999884


No 32 
>>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP, protein structure initiative; HET: MSE AMP; 2.46A {Arabidopsis thaliana} (A:)
Probab=49.93  E-value=16  Score=16.19  Aligned_cols=104  Identities=10%  Similarity=-0.045  Sum_probs=65.4

Q ss_pred             CCCCEEEEE---ECCCCCCCCC-----HHHHHHHH------HCCCCEEEEEEECHHHHCCC-----CCCH--------HH
Q ss_conf             886426888---3586755677-----89999999------57982999997383784788-----8998--------99
Q gi|254781170|r    5 TAMSVHLVW---LRNDLRITDN-----KALYAACH------NSDAKVIAVFIATPEQWRQH-----GISA--------RQ   57 (483)
Q Consensus         5 ~~M~~~IvW---fRrDLRl~DN-----~aL~~A~~------~~~~~vlpvyi~dp~~~~~~-----~~~~--------~~   57 (483)
                      +.|..+|.-   |++-|=.-|.     .||..|++      ..+..+..++++++......     ..+.        ..
T Consensus         2 ~~m~~~i~v~~d~~~ilv~vd~s~~s~~al~~A~~~~~~a~~~~~~i~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2gm3_A            2 GSEPTKVXVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDXRQSN   81 (175)
T ss_dssp             ---CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSH
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99986899998487554666777999999999999998708975899999802777533233454457888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             99999999999999997598099996575350899999999870976142100
Q gi|254781170|r   58 SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR  110 (483)
Q Consensus        58 ~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~  110 (483)
                      ..-..+.|..+.+.+...|........  .|++.+.|.+.+.+.+++-|+.-.
T Consensus        82 ~~~~~~~l~~~~~~~~~~~v~~~~~v~--~g~~~~~I~~~a~~~~~dliVlG~  132 (175)
T 2gm3_A           82 KAKGLHLLEFFVNKCHEIGVGCEAWIK--TGDPKDVICQEVKRVRPDFLVVGS  132 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEEEE--ESCHHHHHHHHHHHHCCSEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEE--CCCHHHHHHHHHHHHCCCEEEECC
T ss_conf             999999999999999862883599752--188899999999983575688547


No 33 
>>2ewf_A Nicking endonuclease N.BSPD6I; helix-turn-helix, beta-alpha-barrel, hydrolase; 1.84A {Bacillus SP} (A:133-285)
Probab=47.51  E-value=5.2  Score=19.29  Aligned_cols=32  Identities=16%  Similarity=0.105  Sum_probs=22.9

Q ss_pred             CCHHHHHHHHHHHHCCCCHHHH--------HHHHHHHHHH
Q ss_conf             8688999999997167635899--------9999999984
Q gi|254781170|r  333 FPIIDAAMRQLNTIGWMHNRLR--------MITASFLVKD  364 (483)
Q Consensus       333 ~PlVDA~MR~L~~tG~mhnr~R--------m~vaSfl~~~  364 (483)
                      ...-|||||.|+.||..+-+++        +..+-||.++
T Consensus       109 ~DYAD~~~RYlR~TGl~~~~G~~l~i~peKk~~id~Ll~~  148 (153)
T 2ewf_A          109 RDVADATTRYFRYTGLFVARGNQLVLNPEKSDLIDEIISS  148 (153)
T ss_dssp             HHHHHHHHHHHHHTTSEEEETTEEEECGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCEEEEECCEEEECCCCHHHHHHHHHH
T ss_conf             6767899999962670897178233063307999999971


No 34 
>>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} (A:)
Probab=45.78  E-value=4.1  Score=19.92  Aligned_cols=19  Identities=16%  Similarity=0.541  Sum_probs=12.1

Q ss_pred             HHHHCCCCCEEHCCCHHHH
Q ss_conf             8872489978330082432
Q gi|254781170|r  415 GKRFDPQGTFIRHWLPELN  433 (483)
Q Consensus       415 ~~~~Dp~g~~ir~wvPeL~  433 (483)
                      ..+|||+|+|.+++--.|+
T Consensus        85 ~~kYDP~g~y~~k~~~~~~  103 (112)
T 1k19_A           85 TAKYDPTGNWRKKYEDRAK  103 (112)
T ss_dssp             HHSSTTTCSSHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHH
T ss_conf             9986989559999999999


No 35 
>>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-binding, excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus} (A:1-208,A:301-346)
Probab=41.37  E-value=22  Score=15.36  Aligned_cols=13  Identities=15%  Similarity=0.258  Sum_probs=10.1

Q ss_pred             CEEEEEEECHHHH
Q ss_conf             2999997383784
Q gi|254781170|r   36 KVIAVFIATPEQW   48 (483)
Q Consensus        36 ~vlpvyi~dp~~~   48 (483)
                      .+-||||||....
T Consensus        69 ~I~pVfVFDG~~~   81 (254)
T 2izo_A           69 GVIPIYVFDGKPP   81 (254)
T ss_dssp             TEEEEEEECC---
T ss_pred             CCCEEEEECCCCC
T ss_conf             9926999817898


No 36 
>>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} (D:125-300)
Probab=39.01  E-value=10  Score=17.39  Aligned_cols=15  Identities=40%  Similarity=0.846  Sum_probs=6.3

Q ss_pred             CCCCHHHHHHHHHHH
Q ss_conf             676358999999999
Q gi|254781170|r  347 GWMHNRLRMITASFL  361 (483)
Q Consensus       347 G~mhnr~Rm~vaSfl  361 (483)
                      ||||-|||.=|++|+
T Consensus       136 aymHsRMR~Rv~~~l  150 (176)
T 1k8k_D          136 AYIHTRMRAKTSDFL  150 (176)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 37 
>>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} (A:1-101,A:213-261)
Probab=37.99  E-value=24  Score=15.02  Aligned_cols=43  Identities=12%  Similarity=-0.036  Sum_probs=18.9

Q ss_pred             CCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             829999973837847888998999999999999999999759809999657
Q gi|254781170|r   35 AKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCS   85 (483)
Q Consensus        35 ~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~   85 (483)
                      ++|+.=|-=.|  -+..+.|..+...+...+      -+..|+.++++-.+
T Consensus        25 ~~vv~RFAPsP--tG~lHlG~~r~al~n~~~------Ar~~gG~~iLRiED   67 (150)
T 1qtq_A           25 TTVHTRFPPEP--NGYLHIGHAKSICLNFGI------AQDYKGQCNLRFDD   67 (150)
T ss_dssp             SSCEEEECCCT--TSCCBHHHHHHHHHHHHH------HHHTTCEEEEEECC
T ss_pred             CEEEEEECCCC--CCCCCHHHHHHHHHHHHH------HHHHCCEEEEEECC
T ss_conf             81899648798--875318999999999999------99829999999788


No 38 
>>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Coxiella burnetii} (A:1-22,A:117-164)
Probab=35.88  E-value=15  Score=16.42  Aligned_cols=14  Identities=43%  Similarity=0.966  Sum_probs=11.1

Q ss_pred             HCCCCCEEHCCCHH
Q ss_conf             24899783300824
Q gi|254781170|r  418 FDPQGTFIRHWLPE  431 (483)
Q Consensus       418 ~Dp~g~~ir~wvPe  431 (483)
                      -|.+|.|||.|-|=
T Consensus        33 tdeegnfikqwnpf   46 (70)
T 3kq5_A           33 TDEEGNFIKQWNPF   46 (70)
T ss_dssp             ECTTCCEEEECCGG
T ss_pred             ECCCCCCCCCCCCC
T ss_conf             44788767654898


No 39 
>>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV} (A:1-51)
Probab=35.77  E-value=26  Score=14.80  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             889999999971676358999999
Q gi|254781170|r  335 IIDAAMRQLNTIGWMHNRLRMITA  358 (483)
Q Consensus       335 lVDA~MR~L~~tG~mhnr~Rm~va  358 (483)
                      |+||+++.+.+.||-+-.||+|+.
T Consensus        14 il~aa~~lf~~~G~~~~s~~~Ia~   37 (51)
T 3cdl_A           14 IVQAAIAEFGDRGFEITSXDRIAA   37 (51)
T ss_dssp             HHHHHHHHHHHHCTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             999999999974925188999999


No 40 
>>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein structure initiative; 2.10A {Bordetella pertussis} (A:1-15,A:92-232)
Probab=34.24  E-value=28  Score=14.65  Aligned_cols=46  Identities=9%  Similarity=-0.022  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             99999999999997598099996575350899999999870976142100
Q gi|254781170|r   61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR  110 (483)
Q Consensus        61 l~esL~~L~~~L~~~g~~L~v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~  110 (483)
                      +.+...++=+.|++.|+.+.+..    |+.......++++.++..++.+.
T Consensus        17 l~p~~~e~i~~lk~~Gi~v~ivT----g~~~~~a~~ia~~lGi~~~~~~~   62 (156)
T 3fvv_A           17 LTVQAVDVVRGHLAAGDLCALVT----ATNSFVTAPIARAFGVQHLIATD   62 (156)
T ss_dssp             CCHHHHHHHHHHHHTTCEEEEEE----SSCHHHHHHHHHHTTCCEEEECE
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEC----CCCHHHHHHHHHHCCCCHHHEEE
T ss_conf             38769999999997593699967----99899999999981980541112


No 41 
>>3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus} (A:1-69)
Probab=33.73  E-value=22  Score=15.24  Aligned_cols=24  Identities=25%  Similarity=0.206  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             889999999971676358999999
Q gi|254781170|r  335 IIDAAMRQLNTIGWMHNRLRMITA  358 (483)
Q Consensus       335 lVDA~MR~L~~tG~mhnr~Rm~va  358 (483)
                      |+||++..|.+.|+-.-.+|.++.
T Consensus         9 il~aa~~~~~~~G~~~~t~~~Ia~   32 (69)
T 3egq_A            9 IIEAALRLYXKKPPHEVSIEEIAR   32 (69)
T ss_dssp             HHHHHHHHHTTSCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             999999999872923067999999


No 42 
>>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} (A:1-365)
Probab=33.63  E-value=6.4  Score=18.72  Aligned_cols=23  Identities=17%  Similarity=0.385  Sum_probs=11.4

Q ss_pred             CCCCCHHHCCC-CCCHHHHHHHHH
Q ss_conf             65446111146-487999999999
Q gi|254781170|r  242 TSQLSPYLSIG-VLSPRQCWNRLK  264 (483)
Q Consensus       242 tSrLSPyL~~G-~IS~R~v~~~~~  264 (483)
                      -|.|.|=+..| .+.-++=+....
T Consensus       313 ~~~lDPS~~lGFy~~~~~d~~dl~  336 (365)
T 2cy7_A          313 IAELDPSIAVGFFCKTEDDFNDWC  336 (365)
T ss_dssp             GGGSCSEEEEEEEESSHHHHHHHH
T ss_pred             HHHCCCCEEEEEEECCHHHHHHHH
T ss_conf             533187779999979899999999


No 43 
>>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoplasm, cytoskeleton, nucleotide-binding; HET: ATP; 3.78A {Schizosaccharomyces pombe} (D:117-317)
Probab=33.56  E-value=14  Score=16.50  Aligned_cols=15  Identities=40%  Similarity=0.718  Sum_probs=6.3

Q ss_pred             CCCCHHHHHHHHHHH
Q ss_conf             676358999999999
Q gi|254781170|r  347 GWMHNRLRMITASFL  361 (483)
Q Consensus       347 G~mhnr~Rm~vaSfl  361 (483)
                      +|||-|||-=|.+|+
T Consensus       162 aymHsRMR~Rv~~fl  176 (201)
T 3dwl_D          162 AYMHQRMRKRVADFQ  176 (201)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 44 
>>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanococcus jannaschii} (A:1-209,A:275-326)
Probab=33.05  E-value=29  Score=14.53  Aligned_cols=41  Identities=12%  Similarity=0.011  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             999999999975980999965753508999999998709761421
Q gi|254781170|r   64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY  108 (483)
Q Consensus        64 sL~~L~~~L~~~g~~L~v~~~~~~g~~~~~L~~l~~~~~i~~v~~  108 (483)
                      -..++..-|+..|++.+.-.    +++...+..+++...+..|..
T Consensus       131 ~~~~~k~lL~~~Gi~~v~Ap----~EAeaqcA~L~~~g~v~aV~s  171 (261)
T 1a76_A          131 MVENCKYLLSLMGIPYVEAP----SEGEAQASYMAKKGDVWAVVS  171 (261)
T ss_dssp             HHHHHHHHHHHHTCCEEECS----SCHHHHHHHHHHTTSSSEEEC
T ss_pred             HHHHHHHHHHHCCCCEEECC----CHHHHHHHHHHHCCCEEEEEC
T ss_conf             99999874152187712357----529999999996598378726


No 45 
>>2rjo_A Twin-arginine translocation pathway signal protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: GAL; 2.05A {Burkholderia phytofirmans psjn} (A:1-117,A:253-287)
Probab=32.03  E-value=30  Score=14.42  Aligned_cols=105  Identities=11%  Similarity=-0.067  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHHCCCCEECCC
Q ss_conf             99999999999999975980999965753508999999998709761421001110011001026888752000000223
Q gi|254781170|r   59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD  138 (483)
Q Consensus        59 ~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~~~~~~~~~~  138 (483)
                      .|..+-+..+++.+++.|..+.+.....-.+......+.....+++.|+..-.. ......+..++...+.++++..++.
T Consensus        18 ~~~~~ii~gi~~~a~~~Gy~lii~~~~~d~~~~~~~i~~l~~~~vDGIIi~~~~-~~~~~~~~~i~~l~~~gIPvV~id~   96 (152)
T 2rjo_A           18 PYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDP-NDSADARVIVEACSKAGAYVTTIWN   96 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECC-SSHHHHHHHHHHHHHHTCEEEEESC
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf             899999999999999729989999389999999999999996599989998366-4210014778899973987898415


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             43455576002378644321014799
Q gi|254781170|r  139 SVLLPPGSILNHALQMYKVYTPFRKA  164 (483)
Q Consensus       139 ~~l~~p~~i~~~~~~~~~vftpf~k~  164 (483)
                      ..--........+.....--.|||-.
T Consensus        97 ~~~~~~~~~V~~Dn~~g~~~A~~~~~  122 (152)
T 2rjo_A           97 KPKDLHPWDYNPNYVAHLSYDPFWLG  122 (152)
T ss_dssp             CCTTCCGGGGTTTEEEEEECCHHHHH
T ss_pred             CCCCCCCCCCCCCCEEEEECCHHHHH
T ss_conf             56543222357872146603299999


No 46 
>>2iye_A Copper-transporting ATPase; hydrolase, P-type ATPase, CPX-ATPase, COPB, heavy metal translocation; 2.6A {Sulfolobus solfataricus} (A:1-39,A:139-263)
Probab=31.58  E-value=31  Score=14.37  Aligned_cols=79  Identities=11%  Similarity=0.156  Sum_probs=49.9

Q ss_pred             ECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH
Q ss_conf             35867556778999999957982999997383784788899899999999999999999975980999965753508999
Q gi|254781170|r   14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW   93 (483)
Q Consensus        14 fRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g~~~~~   93 (483)
                      ||.-+=+.|-.+|..-. .-|.     .|||..- .            +....+.=+.|++.|+..++..    |+....
T Consensus        10 ~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~-~------------~P~a~e~I~~L~~~Gi~v~IiT----GD~~~~   66 (164)
T 2iye_A           10 LHKGMIIKNSNVYEKIK-EIDT-----IIFDKTG-T------------LPNLKDYLEKLKNEGLKIIILS----GDKEDK   66 (164)
T ss_dssp             HHTTCEESSSSGGGTST-TCCE-----EEEESTT-T------------TSCCHHHHHHHHGGGCEEEEEC----SSCHHH
T ss_pred             HHCCEEEECHHHHHHHC-CCCE-----EEECCCC-C------------CCHHHHHHHHHHHCCCCEEEEC----CCCCCC
T ss_conf             97991970859999866-9999-----9991885-2------------3129999999997599279823----874211


Q ss_pred             HHHHHHHCCCCCEEEECCCCCHHH
Q ss_conf             999998709761421001110011
Q gi|254781170|r   94 LDSYCLQQRVTKLFYNRQYEINEV  117 (483)
Q Consensus        94 L~~l~~~~~i~~v~~n~~~~~~~~  117 (483)
                      ...++++.++..||++-  .|..+
T Consensus        67 a~~ia~~lgI~~v~a~v--~p~~K   88 (164)
T 2iye_A           67 VKELSKELNIQEYYSNL--SPEDK   88 (164)
T ss_dssp             HHHHHHHHTCSEEECSC--CHHHH
T ss_pred             CHHHHHHHCHHHHHHCC--CHHHH
T ss_conf             01479985302534023--57889


No 47 
>>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} (A:1-106,A:248-291)
Probab=31.30  E-value=31  Score=14.34  Aligned_cols=78  Identities=9%  Similarity=-0.068  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHHCCCCEECCC
Q ss_conf             99999999999999975980999965753508999999998709761421001110011001026888752000000223
Q gi|254781170|r   59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD  138 (483)
Q Consensus        59 ~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~~~~~~~~~~  138 (483)
                      .|..+-+..+.+.+++.|..+.+.....-.+.....-+.+...+++.|...-   .....-+..++...+.++.+..++.
T Consensus        18 ~f~~~i~~gi~~aa~~~Gy~l~i~~~~~d~~~~~~~i~~l~~~~vdgIIi~~---~~~~~~~~~i~~l~~~gIPvV~i~~   94 (150)
T 3l49_A           18 DWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQL---GNLDVLNPWLQKINDAGIPLFTVDT   94 (150)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEES---SCHHHHHHHHHHHHHTTCCEEEESC
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC---CCCHHHHHHHHHHHHCCCCEEECCC
T ss_conf             8999999999999997399999993899999999999999975999999927---8403058999999986991996677


Q ss_pred             C
Q ss_conf             4
Q gi|254781170|r  139 S  139 (483)
Q Consensus       139 ~  139 (483)
                      .
T Consensus        95 ~   95 (150)
T 3l49_A           95 A   95 (150)
T ss_dssp             C
T ss_pred             C
T ss_conf             6


No 48 
>>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase/DNA complex; 2.00A {Archaeoglobus fulgidus} (A:1-220,A:289-336)
Probab=30.97  E-value=31  Score=14.31  Aligned_cols=88  Identities=6%  Similarity=-0.146  Sum_probs=35.1

Q ss_pred             CEEEEEEECHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCE---EEEEECCCCCCHHHHHHHHHHHCCCCCEEEECC
Q ss_conf             2999997383784788-899899999999999999999975980---999965753508999999998709761421001
Q gi|254781170|r   36 KVIAVFIATPEQWRQH-GISARQSHFIYASLLQVQKSLSQKGIV---FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ  111 (483)
Q Consensus        36 ~vlpvyi~dp~~~~~~-~~~~~~~~Fl~esL~~L~~~L~~~g~~---L~v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~~  111 (483)
                      .+-||||||....... ..-..|..-..+...............   ..-.......+..+.+..+.+..++.-|.+   
T Consensus        72 ~I~pvfVFDG~~~~~K~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~gi~~i~A---  148 (268)
T 1rxw_A           72 GIRPVFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGDKDAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDA---  148 (268)
T ss_dssp             TCEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHCCCCHHHHHHHHHHHHHTTCCEEEC---
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEC---
T ss_conf             98489998589986114788899877777545599998752899999753130078889999999987427515745---


Q ss_pred             CCCHHHHCCHHHHHHHHHC
Q ss_conf             1100110010268887520
Q gi|254781170|r  112 YEINEVRRDKLLEKRLQHR  130 (483)
Q Consensus       112 ~~~~~~~rd~~i~~~l~~~  130 (483)
                        |++.  |..+...++.+
T Consensus       149 --P~EA--daq~A~l~~~g  163 (268)
T 1rxw_A          149 --PSEG--EAQAAYMAAKG  163 (268)
T ss_dssp             --SSCH--HHHHHHHHHTT
T ss_pred             --CCHH--HHHHHHHHHCC
T ss_conf             --5189--99999998749


No 49 
>>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication; 2.00A {Pyrococcus furiosus} (A:1-211,A:289-340)
Probab=29.58  E-value=33  Score=14.16  Aligned_cols=12  Identities=17%  Similarity=0.315  Sum_probs=9.5

Q ss_pred             CEEEEEEECHHH
Q ss_conf             299999738378
Q gi|254781170|r   36 KVIAVFIATPEQ   47 (483)
Q Consensus        36 ~vlpvyi~dp~~   47 (483)
                      .+-||||||..-
T Consensus        72 gI~pVfVFDG~~   83 (263)
T 1b43_A           72 GIKPVYVFDGEP   83 (263)
T ss_dssp             TCEEEEEECCSC
T ss_pred             CCCEEEEEECCC
T ss_conf             998699986897


No 50 
>>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase, RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR; 2.90A {Homo sapiens} PDB: 1ygu_A* (A:294-362,A:550-610)
Probab=29.24  E-value=18  Score=15.92  Aligned_cols=23  Identities=17%  Similarity=0.125  Sum_probs=14.0

Q ss_pred             HCCCC-CCHHHHHHHHHHHHCCCC
Q ss_conf             22788-868899999999716763
Q gi|254781170|r  328 QGYTG-FPIIDAAMRQLNTIGWMH  350 (483)
Q Consensus       328 ~G~TG-~PlVDA~MR~L~~tG~mh  350 (483)
                      -|+|| |=.+|.+|.++..+|.+.
T Consensus        70 vGRTGtfiaid~~l~~i~~~~~vd   93 (130)
T 1ygr_A           70 SQQTGIFCALLNLLESAETEEVVD   93 (130)
T ss_dssp             STTHHHHHHHHHHHHHHHHSSBCC
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             459999999999999997669988


No 51 
>>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3- epimerase, D-tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima} (A:)
Probab=26.82  E-value=37  Score=13.85  Aligned_cols=43  Identities=5%  Similarity=-0.194  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEE-CCCCCCHHHHHHHHHHHCCCC
Q ss_conf             9999999999997598099996-575350899999999870976
Q gi|254781170|r   62 YASLLQVQKSLSQKGIVFQYHQ-CSNFDDSIEWLDSYCLQQRVT  104 (483)
Q Consensus        62 ~esL~~L~~~L~~~g~~L~v~~-~~~~g~~~~~L~~l~~~~~i~  104 (483)
                      -.++.+.-+.+++.|..-+-+. ....+...+.+.+.++++++.
T Consensus        40 ~~~l~~~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~l~~~gl~   83 (290)
T 2zvr_A           40 KGDLRKGMELAKRVGYQAVEIAVRDPSIVDWNEVKILSEELNLP   83 (290)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECSCGGGSCHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCE
T ss_conf             87999999999995999899588895617899999999985990


No 52 
>>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} (A:)
Probab=26.65  E-value=37  Score=13.83  Aligned_cols=103  Identities=11%  Similarity=-0.029  Sum_probs=62.0

Q ss_pred             CCCCEEEEEECCCCCCCCCHHHHHHHH---HCCCCEEEEEEECHHHHC-------CCCCC----HHHHHHHHHHHHHHHH
Q ss_conf             886426888358675567789999999---579829999973837847-------88899----8999999999999999
Q gi|254781170|r    5 TAMSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWR-------QHGIS----ARQSHFIYASLLQVQK   70 (483)
Q Consensus         5 ~~M~~~IvWfRrDLRl~DN~aL~~A~~---~~~~~vlpvyi~dp~~~~-------~~~~~----~~~~~Fl~esL~~L~~   70 (483)
                      |+|.-+|+- ==|.--+-..+|..|+.   ..+..+..+.|+++....       .....    .....-..+-+.++.+
T Consensus         1 s~m~k~Ilv-~vD~s~~s~~al~~a~~~a~~~~~~i~~~hv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (138)
T 1q77_A            1 SNAXKVLLV-LTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWE   79 (138)
T ss_dssp             CCCCEEEEE-EESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEE-EEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             986789999-9839999999999999988762956999995367521223333346643088999999888888999999


Q ss_pred             HHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             9997598099996575350899999999870976142100
Q gi|254781170|r   71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR  110 (483)
Q Consensus        71 ~L~~~g~~L~v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~  110 (483)
                      .+...|+.....-.  .|++.+.|.+++++.+++-|+.-.
T Consensus        80 ~~~~~~~~~~~~~~--~g~~~~~I~~~a~~~~~dliVvG~  117 (138)
T 1q77_A           80 KLTGSTEIPGVEYR--IGPLSEEVKKFVEGKGYELVVWAC  117 (138)
T ss_dssp             HHHSCCCCCCEEEE--CSCHHHHHHHHHTTSCCSEEEECS
T ss_pred             HHHCCCCCEEEEEE--CCCHHHHHHHHHHHCCCCEEEECC
T ss_conf             86336641688750--696599999999984999999968


No 53 
>>1ub2_A Catalase-peroxidase; KATG, synechococcus PCC 7942, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus pcc 7942} (A:298-377)
Probab=26.35  E-value=23  Score=15.20  Aligned_cols=32  Identities=25%  Similarity=0.553  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHCCCHH---CCCCCCCEEEECCCC
Q ss_conf             02233477664133111---474561002012789
Q gi|254781170|r  370 RIGEEYFMSQLLDGDLA---SNNGGWQWAASTGND  401 (483)
Q Consensus       370 r~g~~~f~~~llD~d~~---~n~~~wq~~a~~G~d  401 (483)
                      ++.-.||..+|..||+.   +-.|-|||.+-.|.+
T Consensus        22 ~wdN~yf~~LL~~~eWel~ksPaGa~Qw~~~~~~~   56 (80)
T 1ub2_A           22 QWDNGYFAVCSLNYDWELKKNPAGAWQWEPINPRE   56 (80)
T ss_dssp             SCSSTTTTTTTSSSCEEEEECTTSCEEEEESSCCG
T ss_pred             CCCCHHHHHHHCCCCEECCCCCCCCCCCCCCCCCH
T ss_conf             03430788765024501145766565457777522


No 54 
>>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} (A:1-109,A:256-284)
Probab=25.70  E-value=39  Score=13.72  Aligned_cols=78  Identities=9%  Similarity=0.057  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHHCCCCEECCC
Q ss_conf             99999999999999975980999965753508999999998709761421001110011001026888752000000223
Q gi|254781170|r   59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD  138 (483)
Q Consensus        59 ~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~~~~~~~~~~  138 (483)
                      .|..+-+..+++.+++.|..+.+..........+.+..++ +.+++.|...-.   ....-+..++.....++.+..++.
T Consensus        15 ~f~~~i~~gi~~~a~~~g~~vi~~~~~~~~~~~~~i~~li-~~~vDGIIi~~~---~~~~~~~~i~~l~~~gIPvV~id~   90 (138)
T 8abp_A           15 PWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLA-ASGAKGFVICTP---DPKLGSAIVAKARGYDMKVIAVDD   90 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHH-HTTCCEEEEECS---CGGGHHHHHHHHHHTTCEEEEESS
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH-HCCCCEEEEECC---CCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf             8999999999999997299999985999999999999999-759998998053---234558999999973998899954


Q ss_pred             CC
Q ss_conf             43
Q gi|254781170|r  139 SV  140 (483)
Q Consensus       139 ~~  140 (483)
                      ..
T Consensus        91 ~~   92 (138)
T 8abp_A           91 QF   92 (138)
T ss_dssp             CC
T ss_pred             CC
T ss_conf             54


No 55 
>>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} (A:)
Probab=25.01  E-value=40  Score=13.64  Aligned_cols=95  Identities=13%  Similarity=0.057  Sum_probs=62.1

Q ss_pred             CCCCCCCCHHHHHHH---HHCCCCEEEEEEECHHHHCCC----CCC---HHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             867556778999999---957982999997383784788----899---8999999999999999999759809999657
Q gi|254781170|r   16 NDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQH----GIS---ARQSHFIYASLLQVQKSLSQKGIVFQYHQCS   85 (483)
Q Consensus        16 rDLRl~DN~aL~~A~---~~~~~~vlpvyi~dp~~~~~~----~~~---~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~   85 (483)
                      =|.--....||..|+   +..+..+..++++++......    ...   ........+.+..+.+.+...|.+..+... 
T Consensus        29 vd~s~~s~~al~~a~~la~~~~~~i~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-  107 (294)
T 3loq_A           29 TDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEXSEKAEEVLPEVAQKIEAAGIKAEVIKP-  107 (294)
T ss_dssp             CCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECSS-
T ss_pred             ECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-
T ss_conf             6899999999999999997769989999998886544444545768999999999999999999999976997599999-


Q ss_pred             CCCCHHHHHHHHHHHCCCCCEEEECCC
Q ss_conf             535089999999987097614210011
Q gi|254781170|r   86 NFDDSIEWLDSYCLQQRVTKLFYNRQY  112 (483)
Q Consensus        86 ~~g~~~~~L~~l~~~~~i~~v~~n~~~  112 (483)
                       .|++.+.+...+++.+++-|..-...
T Consensus       108 -~g~~~~~i~~~a~~~~~dliv~g~~~  133 (294)
T 3loq_A          108 -FPAGDPVVEIIKASENYSFIAXGSRG  133 (294)
T ss_dssp             -CCEECHHHHHHHHHTTSSEEEEECCC
T ss_pred             -EECCCHHHHHHHHHCCCCEEEECCCC
T ss_conf             -71599899999985489999989889


No 56 
>>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} (A:1-80,A:232-298)
Probab=23.14  E-value=43  Score=13.42  Aligned_cols=12  Identities=0%  Similarity=-0.236  Sum_probs=7.6

Q ss_pred             HHCCCEEEEEEC
Q ss_conf             975980999965
Q gi|254781170|r   73 SQKGIVFQYHQC   84 (483)
Q Consensus        73 ~~~g~~L~v~~~   84 (483)
                      +..|+.++++-.
T Consensus        34 r~~~G~~lLRiE   45 (147)
T 1nzj_A           34 RARQGRWLVRIE   45 (147)
T ss_dssp             HHTTCEEEEEEC
T ss_pred             HHHCCEEEEEEC
T ss_conf             982998999877


No 57 
>>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* (A:41-160,A:381-404)
Probab=23.10  E-value=15  Score=16.27  Aligned_cols=17  Identities=24%  Similarity=0.556  Sum_probs=10.4

Q ss_pred             HHHHHHHHCCCC--CCHHH
Q ss_conf             678998722788--86889
Q gi|254781170|r  321 HLLQAWKQGYTG--FPIID  337 (483)
Q Consensus       321 ~~~~aW~~G~TG--~PlVD  337 (483)
                      +.+-.|++|-.|  ||.=|
T Consensus        80 ~~v~El~dgiiGdnYPvPd   98 (144)
T 2zy4_A           80 AFLHEMVDGILGCNYPVPP   98 (144)
T ss_dssp             HHHHHHHHHHHTCSCCSSS
T ss_pred             HHHHHHHHHHCCCCCCCCC
T ss_conf             9999998551168897998


No 58 
>>2hc1_A Receptor-type tyrosine-protein phosphatase beta; protein tyrosine phosphatase, WPD-loop, sulfamic acid, inhibitor, drug design, hydrolase; 1.30A {Homo sapiens} PDB: 2h03_A 2hc2_A 2i4g_A* 2h04_A* 2h02_A 2i3u_A 2i3r_A 2i4e_A* 2i4h_A* 2i5x_A* 2ahs_A (A:1-57,A:229-291)
Probab=23.00  E-value=19  Score=15.66  Aligned_cols=40  Identities=20%  Similarity=0.180  Sum_probs=25.4

Q ss_pred             HCCCHHCCHHHHHHHHH-CCCC-CCHHHHHHHHHHHHCCCCH
Q ss_conf             01200010467899872-2788-8688999999997167635
Q gi|254781170|r  312 EKIEWNKDSHLLQAWKQ-GYTG-FPIIDAAMRQLNTIGWMHN  351 (483)
Q Consensus       312 ~~~~w~~~~~~~~aW~~-G~TG-~PlVDA~MR~L~~tG~mhn  351 (483)
                      ...+|.....--.+=|+ |+|| |=.+|.+|.+|..+|-+.-
T Consensus        41 ~~~~~~~a~~peNk~KNVGRTGtfiald~~l~~l~~~~~vdv   82 (120)
T 2hc1_A           41 RNQSCDIALLPENRGKNVGRTGTFIALDRILQQLDSKDSVDI   82 (120)
T ss_dssp             TTCCCTTTTSTTSGGGCSHHHHHHHHHHHHHHHHHHCC-CCH
T ss_pred             CCCCEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             676530005920320162210689999999999985699789


No 59 
>>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* (A:381-422)
Probab=22.86  E-value=20  Score=15.58  Aligned_cols=19  Identities=21%  Similarity=0.517  Sum_probs=13.5

Q ss_pred             HHHHHCCCCCEEHCCCHHH
Q ss_conf             9887248997833008243
Q gi|254781170|r  414 QGKRFDPQGTFIRHWLPEL  432 (483)
Q Consensus       414 q~~~~Dp~g~~ir~wvPeL  432 (483)
                      -.+++||+|.|...|+-.|
T Consensus        21 lr~~lDP~g~F~N~yl~~l   39 (42)
T 2vfr_A           21 LAGALDPAGKFTNAFVRGV   39 (42)
T ss_dssp             HHHHHCTTCTTCCHHHHHH
T ss_pred             HHHHHCCCCCCCCHHHHHH
T ss_conf             9997697987579789975


No 60 
>>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis H37RV} (A:1-128)
Probab=22.22  E-value=45  Score=13.30  Aligned_cols=84  Identities=15%  Similarity=0.140  Sum_probs=48.3

Q ss_pred             HHHHHHHH--HCCCCEEEEEEECHHHHCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH
Q ss_conf             89999999--579829999973837847888--------99899999999999999999975980999965753508999
Q gi|254781170|r   24 KALYAACH--NSDAKVIAVFIATPEQWRQHG--------ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW   93 (483)
Q Consensus        24 ~aL~~A~~--~~~~~vlpvyi~dp~~~~~~~--------~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g~~~~~   93 (483)
                      .+|..|+.  ..++.++.+.++++.......        .-........+-|.++.+.+.+.|..-..... ..|++.+.
T Consensus        32 ~al~~a~~la~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v-~~G~~~~~  110 (128)
T 1tq8_A           32 RAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGAKNVEERP-IVGAPVDA  110 (128)
T ss_dssp             HHHHHHHHHHTTTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTCCEEEEEE-ECSSHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-EECCHHHH
T ss_conf             99999999985489879999996156554422100025689999999999999999999976996299999-81688999


Q ss_pred             HHHHHHHCCCCCEEE
Q ss_conf             999998709761421
Q gi|254781170|r   94 LDSYCLQQRVTKLFY  108 (483)
Q Consensus        94 L~~l~~~~~i~~v~~  108 (483)
                      |.+.+++++++-|+.
T Consensus       111 I~~~a~~~~~DlIVi  125 (128)
T 1tq8_A          111 LVNLADEEKADLLVV  125 (128)
T ss_dssp             HHHHHHHTTCSEEEE
T ss_pred             HHHHHHCCCEEEEEE
T ss_conf             987640353058996


No 61 
>>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} (A:)
Probab=22.19  E-value=45  Score=13.30  Aligned_cols=84  Identities=10%  Similarity=-0.005  Sum_probs=52.8

Q ss_pred             CHHHHHHH---HHCCCCEEEEEEECHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHCCC---EEEEEECCCCCCHHHHH
Q ss_conf             78999999---9579829999973837847888--9989999999999999999997598---09999657535089999
Q gi|254781170|r   23 NKALYAAC---HNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQVQKSLSQKGI---VFQYHQCSNFDDSIEWL   94 (483)
Q Consensus        23 N~aL~~A~---~~~~~~vlpvyi~dp~~~~~~~--~~~~~~~Fl~esL~~L~~~L~~~g~---~L~v~~~~~~g~~~~~L   94 (483)
                      ..+|..|+   +..+..|..|+|.++.......  .......-..+.+......+...++   ...+..    |++.+.|
T Consensus        16 ~~al~~a~~la~~~~~~i~ll~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~I   91 (137)
T 2z08_A           16 RRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGVPKEDALLLE----GVPAEAI   91 (137)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHHCCCGGGEEEEE----SSHHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE----CCHHHHH
T ss_conf             999999999998759999999875146642355026899999999999989999985799718999980----5748999


Q ss_pred             HHHHHHCCCCCEEEEC
Q ss_conf             9999870976142100
Q gi|254781170|r   95 DSYCLQQRVTKLFYNR  110 (483)
Q Consensus        95 ~~l~~~~~i~~v~~n~  110 (483)
                      .+.+++.+++-|+.-.
T Consensus        92 ~~~a~~~~~dliviG~  107 (137)
T 2z08_A           92 LQAARAEKADLIVMGT  107 (137)
T ss_dssp             HHHHHHTTCSEEEEES
T ss_pred             HHHHHHHHHHHEEECC
T ss_conf             9987654445225556


No 62 
>>1zc0_A Tyrosine-protein phosphatase, non-receptor type 7; heptp, human tyrosine phosphatase catalytic domain, LC-PTP, PTPN7, hydrolase; 1.85A {Homo sapiens} PDB: 2gp0_A 2qdc_A 2hvl_A 2qdp_A 2qdm_A 3d44_A* 3d42_A* 2a3k_A (A:1-76,A:244-309)
Probab=22.03  E-value=18  Score=15.85  Aligned_cols=26  Identities=31%  Similarity=0.404  Sum_probs=19.1

Q ss_pred             HHH-CCCC-CCHHHHHHHHHHHHCCCCH
Q ss_conf             872-2788-8688999999997167635
Q gi|254781170|r  326 WKQ-GYTG-FPIIDAAMRQLNTIGWMHN  351 (483)
Q Consensus       326 W~~-G~TG-~PlVDA~MR~L~~tG~mhn  351 (483)
                      .+. |+|| |=.+|.||.+|..+|-++-
T Consensus        74 y~tVGRTGtFiaiDi~l~ql~~~~~VdV  101 (142)
T 1zc0_A           74 YKTIGRTGCFIATRIGCQQLKARGEVDI  101 (142)
T ss_dssp             STTSHHHHHHHHHHHHHHHHHHHSEECH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             9995313689999999999986699589


No 63 
>>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structural genomics, PSI-2; 2.20A {Streptomyces coelicolor} (A:1-88)
Probab=21.87  E-value=46  Score=13.26  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=17.3

Q ss_pred             CHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             6889999999971676358999999
Q gi|254781170|r  334 PIIDAAMRQLNTIGWMHNRLRMITA  358 (483)
Q Consensus       334 PlVDA~MR~L~~tG~mhnr~Rm~va  358 (483)
                      -|+||++..+.+.||=.-.|+.|+.
T Consensus        29 ~Il~aa~~l~~~~G~~~~t~~~Ia~   53 (88)
T 3fiw_A           29 TVITEALDLLDEVGLDGVSTRRLAK   53 (88)
T ss_dssp             HHHHHHHHHHHHHCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             9999999999985935365999999


No 64 
>>1n62_A Carbon monoxide dehydrogenase small chain; CODH, copper, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans OM5} (A:)
Probab=21.69  E-value=40  Score=13.66  Aligned_cols=28  Identities=18%  Similarity=0.180  Sum_probs=19.7

Q ss_pred             HCCHHHHHHHHHCC----CCC-CHHHHHHHHHH
Q ss_conf             01046789987227----888-68899999999
Q gi|254781170|r  317 NKDSHLLQAWKQGY----TGF-PIIDAAMRQLN  344 (483)
Q Consensus       317 ~~~~~~~~aW~~G~----TG~-PlVDA~MR~L~  344 (483)
                      +.+++..+.+-.|.    ||| ||+||.++-..
T Consensus       122 ~p~~~ei~~al~GNlCRCTGY~~I~~Av~~~a~  154 (166)
T 1n62_A          122 SPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAAA  154 (166)
T ss_dssp             SCCHHHHHHHTTTCCCSSSTTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             923667898864751438998899999999999


No 65 
>>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus} (A:1-60)
Probab=20.86  E-value=43  Score=13.44  Aligned_cols=24  Identities=25%  Similarity=0.420  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             889999999971676358999999
Q gi|254781170|r  335 IIDAAMRQLNTIGWMHNRLRMITA  358 (483)
Q Consensus       335 lVDA~MR~L~~tG~mhnr~Rm~va  358 (483)
                      |+||+++.+.+.||=.-.||.|+.
T Consensus        19 il~aa~~l~~~~G~~~~s~~~Ia~   42 (60)
T 3ljl_A           19 IXDAVVDQLLRLGYDKXSYTTLSQ   42 (60)
T ss_dssp             HHHHHHHHHHHTHHHHCCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             999999999871902077999999


Done!