HHsearch results for GI: 254781170 and protein with PDBid: 1dnp_A
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=0 Score=1033.16 Aligned_cols=469 Identities=52% Similarity=0.975 Sum_probs=423.7
Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 42688835867556778999999957982999997383784788899899999999999999999975980999965753
Q gi|254781170|r 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF 87 (483)
Q Consensus 8 ~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~ 87 (483)
|++||||||||||+||+||.+|++.++.+|+||||+||.+++.++.|.+|++|+++||.+|+++|+++|++|+++.++..
T Consensus 1 ~t~ivWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~r~~~Fl~esL~~L~~~L~~~g~~L~i~~g~~~ 80 (471)
T 1dnp_A 1 TTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDF 80 (471)
T ss_dssp CEEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 91999849994543689999999759996899999880564289978999999999999999999978997799976753
Q ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 50899999999870976142100111001100102688875200000022343455576002378644321014799886
Q gi|254781170|r 88 DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 (483)
Q Consensus 88 g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~~ 167 (483)
+.++++|.+++++++|+.|++++++++++..||..|...++ ++.++.++++++++++.+.+..++++++||||+++|.+
T Consensus 81 ~~~~~il~~l~~~~~i~~v~~~~~~~~~~~~rd~~v~~~~~-~~~~~~~~~~~l~~~~~i~~~~~~~~~~ft~f~k~~~~ 159 (471)
T 1dnp_A 81 VASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLK 159 (471)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCT-TSEEEEECCSSSSCTTSSCCTTSCCCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCEEEECCCCEEECCCEEECCCCCCCCCCCHHHHHHHH
T ss_conf 15899999999975960999705412147789999998622-83378458837843412431577663000188999988
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 3156632212455445677667555753234764-345546888764333221111111011012026865456665446
Q gi|254781170|r 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 (483)
Q Consensus 168 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLS 246 (483)
.+........+.|.........+..... .+.+. ......++|||++|+++|++|+++++.+|.+.||.|+.++||+||
T Consensus 160 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ge~~A~~~L~~Fl~~r~~~Y~~~r~~P~~~~tSrLS 238 (471)
T 1dnp_A 160 RLREGMPECVAAPKVRSSGSIEPSPSIT-LNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 238 (471)
T ss_dssp HHHTCCCCCCCCCCCCTTCCCCCCCCCC-CCSCCCCCCTTTSCCSHHHHHHHHHHHHHTHHHHHHHHTTCTTSCCSCCCH
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 6542256666776433310147886434-367644532025884268999999999986666778752375447887658
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCHHHHHHH
Q ss_conf 11114648799999999998643111234772001023202468887888633578886153011012000104678998
Q gi|254781170|r 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 (483)
Q Consensus 247 PyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~~~~~aW 326 (483)
|||+|||||||+|++++.+..... ..+.+...|++||+|||||+++++++|..+...++.+.++.++|+.|++.|++|
T Consensus 239 PyL~~G~IS~R~v~~~~~~~~~~~--~~~~~~~~~~~eL~WRe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W 316 (471)
T 1dnp_A 239 ASLATGGLSPRQCLHRLLAEQPQA--LDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAW 316 (471)
T ss_dssp HHHHHTSSCHHHHHHHHHHHCGGG--GGTSTTHHHHHHHHHHHHHHHHHHHCGGGGGTCCSSGGGGGSCCCCCHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHCCCCCCHHHHHHH
T ss_conf 788708677999999999971012--221107888888888999999999785154421220343320124685888876
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCCC
Q ss_conf 72278886889999999971676358999999999984104700223347766413311147456100201278984702
Q gi|254781170|r 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 (483)
Q Consensus 327 ~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G~d~~~~~ 406 (483)
++|+||||+||||||||++|||||||||||||||||++|+||||+|++||+++|||||||||+|||||+||||+|++|||
T Consensus 317 ~~G~TG~PlvDA~MrqL~~tG~mhnr~Rm~~asfl~~~L~i~Wr~g~~~f~~~llD~d~~~n~~~wq~~ag~g~~~~~~~ 396 (471)
T 1dnp_A 317 QEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYF 396 (471)
T ss_dssp HHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHTTCTTCCHHHHHHHHHHHTTCSTTCCCTT
T ss_pred HCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 42898972899999997866788859999999999856898868889999988147880007589999847588899865
Q ss_pred CCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 20464589887248997833008243279977804955401312578999976318999999999999999640
Q gi|254781170|r 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 (483)
Q Consensus 407 Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~~~~~~~YP~pivd~~~~~~~a~~~~~~~~k~ 480 (483)
|||||++||++|||+|+|||||||||+++|+++||+||+++..+.++.|||+|||||+++|++|+++|+++||+
T Consensus 397 R~~np~~q~~~~Dp~g~yir~wvPeL~~~p~~~ih~pw~~~~~~~~~~~Yp~Pivd~~~~~~~~~~~~~~~rk~ 470 (471)
T 1dnp_A 397 RIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARKG 470 (471)
T ss_dssp CCCCHHHHHHHHTTTCHHHHHHCGGGTTSCTTGGGSHHHHHHTTTCCCSSCCCSSCHHHHHHHHHHHHHHHTCC
T ss_pred EEECHHHHHHHHCCCCCCHHHHCHHHHCCCHHHHCCHHHCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 01089899998698976488859663179977837931161430867899866688999999999999998566