HHsearch results for GI: 254781170 and protein with PDBid: 1dnp_A

>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00  E-value=0  Score=1033.16  Aligned_cols=469  Identities=52%  Similarity=0.975  Sum_probs=423.7

Q ss_pred             CEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             42688835867556778999999957982999997383784788899899999999999999999975980999965753
Q gi|254781170|r    8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF   87 (483)
Q Consensus         8 ~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~   87 (483)
                      |++||||||||||+||+||.+|++.++.+|+||||+||.+++.++.|.+|++|+++||.+|+++|+++|++|+++.++..
T Consensus         1 ~t~ivWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~r~~~Fl~esL~~L~~~L~~~g~~L~i~~g~~~   80 (471)
T 1dnp_A            1 TTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDF   80 (471)
T ss_dssp             CEEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             91999849994543689999999759996899999880564289978999999999999999999978997799976753


Q ss_pred             CCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             50899999999870976142100111001100102688875200000022343455576002378644321014799886
Q gi|254781170|r   88 DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ  167 (483)
Q Consensus        88 g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~~  167 (483)
                      +.++++|.+++++++|+.|++++++++++..||..|...++ ++.++.++++++++++.+.+..++++++||||+++|.+
T Consensus        81 ~~~~~il~~l~~~~~i~~v~~~~~~~~~~~~rd~~v~~~~~-~~~~~~~~~~~l~~~~~i~~~~~~~~~~ft~f~k~~~~  159 (471)
T 1dnp_A           81 VASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLK  159 (471)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCT-TSEEEEECCSSSSCTTSSCCTTSCCCSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCEEEECCCCEEECCCEEECCCCCCCCCCCHHHHHHHH
T ss_conf             15899999999975960999705412147789999998622-83378458837843412431577663000188999988


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf             3156632212455445677667555753234764-345546888764333221111111011012026865456665446
Q gi|254781170|r  168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS  246 (483)
Q Consensus       168 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLS  246 (483)
                      .+........+.|.........+..... .+.+. ......++|||++|+++|++|+++++.+|.+.||.|+.++||+||
T Consensus       160 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ge~~A~~~L~~Fl~~r~~~Y~~~r~~P~~~~tSrLS  238 (471)
T 1dnp_A          160 RLREGMPECVAAPKVRSSGSIEPSPSIT-LNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS  238 (471)
T ss_dssp             HHHTCCCCCCCCCCCCTTCCCCCCCCCC-CCSCCCCCCTTTSCCSHHHHHHHHHHHHHTHHHHHHHHTTCTTSCCSCCCH
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             6542256666776433310147886434-367644532025884268999999999986666778752375447887658


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCHHHHHHH
Q ss_conf             11114648799999999998643111234772001023202468887888633578886153011012000104678998
Q gi|254781170|r  247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW  326 (483)
Q Consensus       247 PyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~~~~~aW  326 (483)
                      |||+|||||||+|++++.+.....  ..+.+...|++||+|||||+++++++|..+...++.+.++.++|+.|++.|++|
T Consensus       239 PyL~~G~IS~R~v~~~~~~~~~~~--~~~~~~~~~~~eL~WRe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W  316 (471)
T 1dnp_A          239 ASLATGGLSPRQCLHRLLAEQPQA--LDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAW  316 (471)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHCGGG--GGTSTTHHHHHHHHHHHHHHHHHHHCGGGGGTCCSSGGGGGSCCCCCHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHCCCCCCHHHHHHH
T ss_conf             788708677999999999971012--221107888888888999999999785154421220343320124685888876


Q ss_pred             HHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCCC
Q ss_conf             72278886889999999971676358999999999984104700223347766413311147456100201278984702
Q gi|254781170|r  327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF  406 (483)
Q Consensus       327 ~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G~d~~~~~  406 (483)
                      ++|+||||+||||||||++|||||||||||||||||++|+||||+|++||+++|||||||||+|||||+||||+|++|||
T Consensus       317 ~~G~TG~PlvDA~MrqL~~tG~mhnr~Rm~~asfl~~~L~i~Wr~g~~~f~~~llD~d~~~n~~~wq~~ag~g~~~~~~~  396 (471)
T 1dnp_A          317 QEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYF  396 (471)
T ss_dssp             HHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHTTCTTCCHHHHHHHHHHHTTCSTTCCCTT
T ss_pred             HCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf             42898972899999997866788859999999999856898868889999988147880007589999847588899865


Q ss_pred             CCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             20464589887248997833008243279977804955401312578999976318999999999999999640
Q gi|254781170|r  407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ  480 (483)
Q Consensus       407 Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~~~~~~~YP~pivd~~~~~~~a~~~~~~~~k~  480 (483)
                      |||||++||++|||+|+|||||||||+++|+++||+||+++..+.++.|||+|||||+++|++|+++|+++||+
T Consensus       397 R~~np~~q~~~~Dp~g~yir~wvPeL~~~p~~~ih~pw~~~~~~~~~~~Yp~Pivd~~~~~~~~~~~~~~~rk~  470 (471)
T 1dnp_A          397 RIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARKG  470 (471)
T ss_dssp             CCCCHHHHHHHHTTTCHHHHHHCGGGTTSCTTGGGSHHHHHHTTTCCCSSCCCSSCHHHHHHHHHHHHHHHTCC
T ss_pred             EEECHHHHHHHHCCCCCCHHHHCHHHHCCCHHHHCCHHHCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             01089899998698976488859663179977837931161430867899866688999999999999998566