HHsearch results for GI: 254781170 and protein with PDBid: 1owl_A

>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus pcc 6301} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00  E-value=0  Score=993.12  Aligned_cols=460  Identities=35%  Similarity=0.613  Sum_probs=406.5

Q ss_pred             EEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             68883586755677899999995798299999738378478889989999999999999999997598099996575350
Q gi|254781170|r   10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD   89 (483)
Q Consensus        10 ~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g~   89 (483)
                      .||||||||||+||+||.+|++.++ +|+||||+||.+++.++.|++|++|+++||.+|+++|+++|++|+|+.    |+
T Consensus         5 Vl~WfrrDLRl~DN~aL~~A~~~~~-~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~----G~   79 (484)
T 1owl_A            5 ILFWHRRDLRLSDNIGLAAARAQSA-QLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQ----GD   79 (484)
T ss_dssp             EEEEESSCCCSSSCHHHHHHHHHCS-CEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEE----SC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE----EC
T ss_conf             8999789853525799999996799-799999987667428997999999999999999999997899679999----47


Q ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             899999999870976142100111001100102688875-2000000223434555760023786443210147998863
Q gi|254781170|r   90 SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN  168 (483)
Q Consensus        90 ~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~~~  168 (483)
                      +.++|.+|+++++|+.|+++++|++++..||..+...++ .++.+..+.++++++|+.+.+..+++|++||||+|+|.+.
T Consensus        80 ~~~~l~~L~~~~~i~~v~~~~e~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~l~~p~~v~~~~~~~~~vft~f~k~~~~~  159 (484)
T 1owl_A           80 PQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQ  159 (484)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCEECCCEEECCCCCCCCCCCHHHHHHHHC
T ss_conf             89999999998699799997115631567777777654036725431366411267622337999764221899999855


Q ss_pred             CCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf             15663221245544567-------76675557532347643-45546888764333221111111011012026865456
Q gi|254781170|r  169 LVQADLRSLPVPAIRLT-------GPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ  240 (483)
Q Consensus       169 ~~~~~~~~~p~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~  240 (483)
                      ....++.. |.......       .......++...+.... .....++|||++|+++|++|+++++.+|+++||.|+.+
T Consensus       160 ~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGE~~A~~~L~~Fl~~~l~~Y~~~Rn~P~~~  238 (484)
T 1owl_A          160 PKPTPVAT-PTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEA  238 (484)
T ss_dssp             CCCCCCCC-CCSCCCCCHHHHHHHGGGCCSSCCCTGGGTCCCCSCCSSCSSHHHHHHHHHHHHHTGGGGHHHHTTCTTSC
T ss_pred             CCCCCCCC-CCCCCCCCHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             56566668-62013555010254432222112446550755344788896299999999997566776246667885667


Q ss_pred             CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCC-CCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCC
Q ss_conf             66544611114648799999999998643111-23477200102320246888788863357888615301101200010
Q gi|254781170|r  241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD  319 (483)
Q Consensus       241 ~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~~-~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~  319 (483)
                      +||+|||||||||||||+||+++.+....... +...+...|++||+|||||+++++++|++.. .++++.++.++|+.+
T Consensus       239 ~tSrLSPyL~fG~IS~R~v~~~~~~~~~~~~~~~~~~~~~~f~~eL~WReff~~~l~~~p~~~~-~~~~~~~~~~~~~~~  317 (484)
T 1owl_A          239 GTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLAD-GPYRSLWQQFPWENR  317 (484)
T ss_dssp             CSCCCHHHHHTTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGG-SCCSTGGGGCCCCCC
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH-HHCCCHHCCCCCCCC
T ss_conf             6565171016765779999999998752100122453146888898999999888872803444-430421103786447


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECC
Q ss_conf             46789987227888688999999997167635899999999998410470022334776641331114745610020127
Q gi|254781170|r  320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG  399 (483)
Q Consensus       320 ~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G  399 (483)
                      ++.|++|++|+|||||||||||||++|||||||||||||||||++|+||||+|+.||+++|||||+|||+|||||+||||
T Consensus       318 ~~~~~~W~~G~TG~PlvDA~MRqL~~tGwmhnr~Rm~vasfl~~~L~~~Wr~g~~~f~~~llD~d~a~n~~~wqw~ag~g  397 (484)
T 1owl_A          318 EALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSG  397 (484)
T ss_dssp             HHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCTHHHHHHHHTTCTTCCHHHHHHHHHHTTTCS
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHEEECCC
T ss_conf             89999997066787489999999998688558999999999876468789999999998603588657977766222215


Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             89847022046458988724899783300824327997780495540131257899997631899999999999999964
Q gi|254781170|r  400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK  479 (483)
Q Consensus       400 ~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~~~~~~~YP~pivd~~~~~~~a~~~~~~~~k  479 (483)
                      +|++| ||||||++|++||||+|+|||||||||++||+++||+||..+.   ++.|||+|||||+++|++|+++|+++|+
T Consensus       398 ~d~~~-~R~~np~~q~~~~Dp~g~yir~wvPeL~~~~~~~i~~~~~~~~---~~~~Yp~pivd~~~~~~~~~~~~~~~k~  473 (484)
T 1owl_A          398 MDPKP-LRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPI---ERRGYPAPIVNHNLRQKQFKALYNQLKA  473 (484)
T ss_dssp             SSCCC-CCCCCHHHHHHHHSTTCHHHHHHCGGGTTSCHHHHHHTCCCHH---HHTTSCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCC-CEEECHHHHHHHHCCCCCCHHHHCHHHCCCCHHHHCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             69998-6310788999984999771877397532899678539010654---4479986758879999999999999876


Q ss_pred             H
Q ss_conf             0
Q gi|254781170|r  480 Q  480 (483)
Q Consensus       480 ~  480 (483)
                      +
T Consensus       474 ~  474 (484)
T 1owl_A          474 A  474 (484)
T ss_dssp             H
T ss_pred             H
T ss_conf             3