HHsearch results for GI: 254781170 and protein with PDBid: 1owl_A
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus pcc 6301} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=0 Score=993.12 Aligned_cols=460 Identities=35% Similarity=0.613 Sum_probs=406.5
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 68883586755677899999995798299999738378478889989999999999999999997598099996575350
Q gi|254781170|r 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89 (483)
Q Consensus 10 ~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g~ 89 (483)
.||||||||||+||+||.+|++.++ +|+||||+||.+++.++.|++|++|+++||.+|+++|+++|++|+|+. |+
T Consensus 5 Vl~WfrrDLRl~DN~aL~~A~~~~~-~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~----G~ 79 (484)
T 1owl_A 5 ILFWHRRDLRLSDNIGLAAARAQSA-QLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQ----GD 79 (484)
T ss_dssp EEEEESSCCCSSSCHHHHHHHHHCS-CEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEE----SC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE----EC
T ss_conf 8999789853525799999996799-799999987667428997999999999999999999997899679999----47
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 899999999870976142100111001100102688875-2000000223434555760023786443210147998863
Q gi|254781170|r 90 SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 (483)
Q Consensus 90 ~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~~~ 168 (483)
+.++|.+|+++++|+.|+++++|++++..||..+...++ .++.+..+.++++++|+.+.+..+++|++||||+|+|.+.
T Consensus 80 ~~~~l~~L~~~~~i~~v~~~~e~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~l~~p~~v~~~~~~~~~vft~f~k~~~~~ 159 (484)
T 1owl_A 80 PQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQ 159 (484)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCEECCCEEECCCCCCCCCCCHHHHHHHHC
T ss_conf 89999999998699799997115631567777777654036725431366411267622337999764221899999855
Q ss_pred CCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 15663221245544567-------76675557532347643-45546888764333221111111011012026865456
Q gi|254781170|r 169 LVQADLRSLPVPAIRLT-------GPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 (483)
Q Consensus 169 ~~~~~~~~~p~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~ 240 (483)
....++.. |....... .......++...+.... .....++|||++|+++|++|+++++.+|+++||.|+.+
T Consensus 160 ~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGE~~A~~~L~~Fl~~~l~~Y~~~Rn~P~~~ 238 (484)
T 1owl_A 160 PKPTPVAT-PTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEA 238 (484)
T ss_dssp CCCCCCCC-CCSCCCCCHHHHHHHGGGCCSSCCCTGGGTCCCCSCCSSCSSHHHHHHHHHHHHHTGGGGHHHHTTCTTSC
T ss_pred CCCCCCCC-CCCCCCCCHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 56566668-62013555010254432222112446550755344788896299999999997566776246667885667
Q ss_pred CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCC-CCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCC
Q ss_conf 66544611114648799999999998643111-23477200102320246888788863357888615301101200010
Q gi|254781170|r 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 (483)
Q Consensus 241 ~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~~-~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~ 319 (483)
+||+|||||||||||||+||+++.+....... +...+...|++||+|||||+++++++|++.. .++++.++.++|+.+
T Consensus 239 ~tSrLSPyL~fG~IS~R~v~~~~~~~~~~~~~~~~~~~~~~f~~eL~WReff~~~l~~~p~~~~-~~~~~~~~~~~~~~~ 317 (484)
T 1owl_A 239 GTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLAD-GPYRSLWQQFPWENR 317 (484)
T ss_dssp CSCCCHHHHHTTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGG-SCCSTGGGGCCCCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH-HHCCCHHCCCCCCCC
T ss_conf 6565171016765779999999998752100122453146888898999999888872803444-430421103786447
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECC
Q ss_conf 46789987227888688999999997167635899999999998410470022334776641331114745610020127
Q gi|254781170|r 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 (483)
Q Consensus 320 ~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G 399 (483)
++.|++|++|+|||||||||||||++|||||||||||||||||++|+||||+|+.||+++|||||+|||+|||||+||||
T Consensus 318 ~~~~~~W~~G~TG~PlvDA~MRqL~~tGwmhnr~Rm~vasfl~~~L~~~Wr~g~~~f~~~llD~d~a~n~~~wqw~ag~g 397 (484)
T 1owl_A 318 EALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSG 397 (484)
T ss_dssp HHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCTHHHHHHHHTTCTTCCHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHEEECCC
T ss_conf 89999997066787489999999998688558999999999876468789999999998603588657977766222215
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89847022046458988724899783300824327997780495540131257899997631899999999999999964
Q gi|254781170|r 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 (483)
Q Consensus 400 ~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~~~~~~~YP~pivd~~~~~~~a~~~~~~~~k 479 (483)
+|++| ||||||++|++||||+|+|||||||||++||+++||+||..+. ++.|||+|||||+++|++|+++|+++|+
T Consensus 398 ~d~~~-~R~~np~~q~~~~Dp~g~yir~wvPeL~~~~~~~i~~~~~~~~---~~~~Yp~pivd~~~~~~~~~~~~~~~k~ 473 (484)
T 1owl_A 398 MDPKP-LRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPI---ERRGYPAPIVNHNLRQKQFKALYNQLKA 473 (484)
T ss_dssp SSCCC-CCCCCHHHHHHHHSTTCHHHHHHCGGGTTSCHHHHHHTCCCHH---HHTTSCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCC-CEEECHHHHHHHHCCCCCCHHHHCHHHCCCCHHHHCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 69998-6310788999984999771877397532899678539010654---4479986758879999999999999876
Q ss_pred H
Q ss_conf 0
Q gi|254781170|r 480 Q 480 (483)
Q Consensus 480 ~ 480 (483)
+
T Consensus 474 ~ 474 (484)
T 1owl_A 474 A 474 (484)
T ss_dssp H
T ss_pred H
T ss_conf 3