HHsearch results for GI: 254781170 and protein with PDBid: 1u3d_A
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=0 Score=1017.26 Aligned_cols=468 Identities=28% Similarity=0.469 Sum_probs=409.8
Q ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 64268883586755677899999995798299999738378478889989999999999999999997598099996575
Q gi|254781170|r 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86 (483)
Q Consensus 7 M~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~ 86 (483)
+.++||||||||||+||+||.+|++. ++|+|||||||.+++.++.|.+|.+|+++||.+|+++|+++|++|+++.+
T Consensus 11 ~~~sivWFRrDLRl~DN~aL~~A~~~--~~vl~lyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~g-- 86 (509)
T 1u3d_A 11 GGCSIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRS-- 86 (509)
T ss_dssp --CEEEEESSCCCSTTCHHHHHHHHH--SCEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHCC--CCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC--
T ss_conf 99589982899664149999999849--99899999772332589966899999999999999999987996799968--
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 350899999999870976142100111001100102688875-2000000223434555760023786443210147998
Q gi|254781170|r 87 FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165 (483)
Q Consensus 87 ~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~ 165 (483)
++++++|.+++++++|+.|++|++|++++..||+.|...|+ .++.+.+++++++++|+.+.+..+.+|++||||++++
T Consensus 87 -~d~~~~l~~l~~~~~i~~V~~~~~~~~~~~~rd~~v~~~~~~~~I~~~~~~~~~l~~~~~~~~~~~~~~~~f~~f~~~~ 165 (509)
T 1u3d_A 87 -TDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERC 165 (509)
T ss_dssp -SCHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf -8879999999998199889992453702787888764236650923785114323573000245688630357899999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCC--CCCCC--CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 863156632212455445677667--55575--323476-4345546888764333221111111011012026865456
Q gi|254781170|r 166 IQNLVQADLRSLPVPAIRLTGPVT--PSNIP--RFFDYP-FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 (483)
Q Consensus 166 ~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~--~~~~~~-~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~ 240 (483)
.......++...+.+......... ...+. .....+ .......|+|||++|+++|++|+++++.+|.+.|+.|+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~~Y~~~r~~p~~~ 245 (509)
T 1u3d_A 166 LSMPYDPESPLLPPKKIISGDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSA 245 (509)
T ss_dssp HTCSSCCCCCCCCCSCCCBTTGGGSSCCCCCCCCHHHHHHHTTHHHHCCCSHHHHHHHHHHHHTTGGGGTTTTTTCSSST
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 86311246665643112444543233476443322224742014540685468999999887766666530245675334
Q ss_pred CCCCCCHHHCCCCCCHHHHHHHHHHHHHHH----CCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCH
Q ss_conf 665446111146487999999999986431----1123477200102320246888788863357888615301101200
Q gi|254781170|r 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDL----LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316 (483)
Q Consensus 241 ~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~----~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w 316 (483)
+||+|||||+|||||||+||++++...... ....+.+.++|++||+|||||+++++++|... ..++.+.++.++|
T Consensus 246 ~tSrLSPyLa~G~IS~R~v~~~v~~~~~~~~~~~~~~~~~~~~~f~~eL~wRef~~~~~~~~p~~~-~~~~~~~~~~~~~ 324 (509)
T 1u3d_A 246 TTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSH-ERPLLGHLKFFPW 324 (509)
T ss_dssp TSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTT-TSCSCCTTTTCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HCCCHHHHCCCCC
T ss_conf 543356322557676999999999987765420010007899999999999999999987293444-2420123213664
Q ss_pred HCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEE
Q ss_conf 01046789987227888688999999997167635899999999998410470022334776641331114745610020
Q gi|254781170|r 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 (483)
Q Consensus 317 ~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a 396 (483)
..|++.|++|++|+|||||||||||||++||||||||||||||||||+||||||+||+||+++|||||||+|+|||||+|
T Consensus 325 ~~d~~~~~aW~~G~TG~P~vDA~MRqL~~tGwmhnr~R~~vasfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a 404 (509)
T 1u3d_A 325 AVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYIT 404 (509)
T ss_dssp CCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 45869999998637798189999999998789887999999999999851208999999999723877576889998740
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHH------CCCCCCCCCCCCCHHHHHHHH
Q ss_conf 12789847022046458988724899783300824327997780495540131------257899997631899999999
Q gi|254781170|r 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHT 470 (483)
Q Consensus 397 ~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~------~~~~~~YP~pivd~~~~~~~a 470 (483)
|||+|++||+|||||++||++|||+|+|||||||||++||+++||+||+++.. +.+|.|||.|||||++||++|
T Consensus 405 g~g~d~~~~~Ri~np~~q~~~~Dp~g~fIr~wvPeL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~Pivd~~~~~~~~ 484 (509)
T 1u3d_A 405 GTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARL 484 (509)
T ss_dssp TCSTTCCCSSCCCCHHHHHHHHCTTSHHHHHHCGGGTTCCHHHHTCTTTSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHCHHHHCCCHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 78988777541069889999869897609885914114997773691119989999839867899970228789999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999640
Q gi|254781170|r 471 LNQYYAAKKQ 480 (483)
Q Consensus 471 ~~~~~~~~k~ 480 (483)
+++++++++.
T Consensus 485 ~~~~~~~~~~ 494 (509)
T 1u3d_A 485 HEALSQMWQL 494 (509)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999988