HHSEARCH alignment of GI: 254781170 and SCOP domain: d1np7a2

Alignment
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=100.00  E-value=2.5e-40  Score=273.26  Aligned_cols=158  Identities=23%  Similarity=0.360  Sum_probs=146.7

Q ss_pred             CEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             42688835867556778999999957982999997383784788-----8998999999999999999999759809999
Q gi|254781170|r    8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYASLLQVQKSLSQKGIVFQYH   82 (483)
Q Consensus         8 ~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~-----~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~   82 (483)
                      ++.||||||||||+||+||.+|++.++ +|+||||+||.++...     ..|.+|.+|+++||.+|+++|+++|++|+++
T Consensus         6 ~~~lvWfr~DLRl~DN~aL~~A~~~~~-~vi~vyi~dp~~~~~~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~   84 (204)
T d1np7a2           6 PTVLVWFRNDLRLHDHEPLHRALKSGL-AITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVT   84 (204)
T ss_dssp             CEEEEEESSCCCSTTCHHHHHHHHTTS-EEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHCCC-CEEEEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             968999489874020799999996599-4899999782575075400121368999999999999999988603035665


Q ss_pred             ECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             6575350899999999870976142100111001100102688875-200000022343455576002378644321014
Q gi|254781170|r   83 QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPF  161 (483)
Q Consensus        83 ~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf  161 (483)
                      .    |++.++|.+++++++|+.||+|++|++++++||+.|.+.|+ .++.++.+++++|++|+++.++.|++|+|||||
T Consensus        85 ~----G~~~~~l~~l~~~~~i~~V~~n~~~~~~e~~rd~~v~~~l~~~~i~~~~~~~~~L~~p~~l~~~~~~~~~vFTpF  160 (204)
T d1np7a2          85 T----GLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKF  160 (204)
T ss_dssp             E----SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGGGCCSSHHHH
T ss_pred             H----HHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCHHH
T ss_conf             5----335899999999850011011113458999999877553113304667515765348502557999998556199


Q ss_pred             HHHHHHHCC
Q ss_conf             799886315
Q gi|254781170|r  162 RKALIQNLV  170 (483)
Q Consensus       162 ~k~~~~~~~  170 (483)
                      +|+|++...
T Consensus       161 rk~~e~~~~  169 (204)
T d1np7a2         161 RKDIEKKKI  169 (204)
T ss_dssp             HHHHHTTTC
T ss_pred             HHHHHHCCC
T ss_conf             999986668


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Cryptochrome/photolyase, N-terminal domain
superfamily: Cryptochrome/photolyase, N-terminal domain
family: Cryptochrome/photolyase, N-terminal domain
domain: Cryptochrome
species: Synechocystis sp., pcc 6803 [TaxId: 1143]