HHSEARCH alignment of GI: 254781170 and SCOP domain: d1owla1

Alignment
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]}
Probab=100.00  E-value=0  Score=663.31  Aligned_cols=268  Identities=43%  Similarity=0.795  Sum_probs=249.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHC-CCCCCCCHHHCCCCC
Q ss_conf             8887643332211111110110120268654566654461111464879999999999864311-123477200102320
Q gi|254781170|r  208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELI  286 (483)
Q Consensus       208 ~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~-~~~~~~~~~fl~eL~  286 (483)
                      ++|||++|+++|++||++++.+|.++||.|+.++||+|||||||||||+|+|++++.+...... .....+.+.|++||+
T Consensus         2 ~~pGE~~Al~~L~~Fl~~~l~~Y~~~Rn~p~~~~tS~LSPyL~fG~IS~R~v~~~~~~~~~~~~~~~~~~~~~~f~~eL~   81 (271)
T d1owla1           2 VEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELA   81 (271)
T ss_dssp             SCSSHHHHHHHHHHHHHTGGGGHHHHTTCTTSCCSCCCHHHHHTTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf             88139999999999998787763200389887787147888845806799999999875000012335622677633667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Q ss_conf             24688878886335788861530110120001046789987227888688999999997167635899999999998410
Q gi|254781170|r  287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL  366 (483)
Q Consensus       287 WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~  366 (483)
                      |||||++.++++|.+.. ..+.+.++.++|+.+++.|++|++|+||+|+||||||||++||||||||||+||||||++|+
T Consensus        82 wR~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~Rm~~as~l~~~l~  160 (271)
T d1owla1          82 WREFYQHALYHFPSLAD-GPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLI  160 (271)
T ss_dssp             HHHHHHHHHHHCGGGGG-SCCSTGGGGCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHH-HCCCCHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             79999999987412333-01320121255210146776213323476599999986004674108899999999874013


Q ss_pred             CCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHH
Q ss_conf             47002233477664133111474561002012789847022046458988724899783300824327997780495540
Q gi|254781170|r  367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW  446 (483)
Q Consensus       367 idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~  446 (483)
                      ||||.|+.||+++|||||+|+|++||||+||+|+|+++ +|+|||++|++||||+|+|||||||||++||+++||+||..
T Consensus       161 i~W~~g~~~f~~~liD~d~a~n~~~wqw~ag~g~d~~~-~r~~np~~q~~k~Dp~g~yir~w~Pel~~~~~~~i~~~~~~  239 (271)
T d1owla1         161 IDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEIT  239 (271)
T ss_dssp             CCTHHHHHHHHTTCTTCCHHHHHHHHHHTTTCSSSCCC-CCCCCHHHHHHHHSTTCHHHHHHCGGGTTSCHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC-CCCCHHHHHHHHCCCHHHHHHHHCHHHCCCCHHHHCCCCCC
T ss_conf             04226589999999856888883001344446778655-42002353666506188999996855304996774280007


Q ss_pred             HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             1312578999976318999999999999999640
Q gi|254781170|r  447 LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ  480 (483)
Q Consensus       447 ~~~~~~~~~YP~pivd~~~~~~~a~~~~~~~~k~  480 (483)
                      +.   .++|||+||||++++|++++++|+++||.
T Consensus       240 ~~---~~~~Yp~pivd~~~~~~~~~~~~~~~k~~  270 (271)
T d1owla1         240 PI---ERRGYPAPIVNHNLRQKQFKALYNQLKAA  270 (271)
T ss_dssp             HH---HHTTSCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             54---46899724467799999999999988631


SCOP domain information

class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: C-terminal domain of DNA photolyase
species: Synechococcus elongatus [TaxId: 32046]