PSIBLAST alignment of GI: 254781170 and protein with PDB id: 1u3c
>gi|52695977|pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From Arabidopsis Thaliana Length = 509
>gi|52695978|pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From Arabidopsis Thaliana With Amppnp Bound Length = 509
Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats.
Identities = 135/486 (27%), Positives = 222/486 (45%), Gaps = 25/486 (5%)
Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
+VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72
Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
SL G + + DS+ L +++F+N Y+ + RD + L +
Sbjct: 73 SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129
Query: 131 VICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
I ++ L P + + + + ++ F + + + LP I
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189
Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
P F+ + + + G N L F + Y + R TS
Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249
Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
LSP+L G +S R+ ++ ++ + + + +L + RE+ R++ +P
Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308
Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
+P + + W D + +AW+QG TG+P++DA MR+L GW+H+R+R++ +SF
Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368
Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
VK L + WR G +YF LLD DL S+ GWQ+ T DS + RI NP +G +FDP
Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428
Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
G ++R WLPEL+ +PT +IH P + + +L NYPLPIV +A L
Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488
Query: 472 NQYYAA 477
+Q +
Sbjct: 489 SQMWQL 494