RPSBLAST alignment for GI: 254781170 and conserved domain: TIGR03556

>gnl|CDD|132595 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420. Length = 471

 Score =  316 bits (810), Expect = 1e-86
 Identities = 169/474 (35%), Positives = 244/474 (51%), Gaps = 37/474 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR++DN  L AA   S AKV+ +F   P   +   ++  +  ++   L ++Q+
Sbjct: 4   LFWHRRDLRLSDNIGLAAARQQS-AKVVGLFCLDPNILQADDMAPARVAYLIGCLQELQQ 62

Query: 71  SLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
              Q G   ++ Q        D ++ +     Q     +++N   E    +RD+ +   L
Sbjct: 63  RYQQAGSQLLILQ-------GDPVQLIPQLAQQLGAKAVYWNLDVEPYGRKRDRAVAAAL 115

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--- 183
           +   I   +  D +L  P  IL  +   Y VYTPF K        +  +  PV       
Sbjct: 116 KEAGIAVVTLWDQLLHSPDEILTGSGNPYTVYTPFWKNW-----SSLPKPTPVATPTELE 170

Query: 184 --------LTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQ 233
                      P+    +P   D  F   D    +  GE  A   L +FC   +  Y EQ
Sbjct: 171 GLTEAELEAAAPLGVIALPTAKDLGFDW-DGDLILEPGETAAQARLEEFCDRAIADYQEQ 229

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYR 292
           R+ PA+ GTSQLSP L  GV+  R  W   +E   +   +    +  +W  EL WREFY+
Sbjct: 230 RNFPALDGTSQLSPALKFGVIGIRTVWQATQEAHENSRSEEARNSIRTWQQELAWREFYQ 289

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H +  +P +  G     +     W  +    QAW +G TG+PI+DAAMRQLN  GWMHNR
Sbjct: 290 HALYHFPELADGPYRSLFQN-FPWENNEAHFQAWCEGRTGYPIVDAAMRQLNETGWMHNR 348

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI ASFL KDL+++W+ GE+YFM +L+DGDLA+NNGGWQW+AS+G D  P  RIFNP 
Sbjct: 349 CRMIVASFLTKDLIINWQWGEKYFMQKLIDGDLAANNGGWQWSASSGMDPKP-LRIFNPA 407

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465
            Q ++FDP+  +IR WLPEL +V T+  +    + L++   ++ YPLPIVDH +
Sbjct: 408 SQAQKFDPEAEYIRRWLPELRSVDTKDLVTGKITPLERR--AVGYPLPIVDHNQ 459