RPSBLAST alignment of GI: 254781170 and MMDB domain: 1u3d_A_1-259

>1u3d_A (A:1-259) Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana}Length = 259
 Score =  161 bits (408), Expect = 2e-40
 Identities = 57/260 (21%), Positives = 98/260 (37%), Gaps = 11/260 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           +    +    +VW R DLR+ DN AL AA       VIA+F+  PE+   +        +
Sbjct: 5   VSGCGSGGCSIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWW 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL Q+  SL   G      +     DS+  L         +++F+N  Y+   + RD
Sbjct: 63  LKNSLAQLDSSLRSLGTCLITKRS---TDSVASLLDVVKSTGASQIFFNHLYDPLSLVRD 119

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              +  L  + I  +SF+  +L  P  + +   + + ++  F +  +      +   LP 
Sbjct: 120 HRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPP 179

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
             I           P  F+   +      +   +  G  N    L  F    +  Y + R
Sbjct: 180 KKIISGDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNR 239

Query: 235 DIPAIQGTSQLSPYLSIGVL 254
                  TS LSP+L  G +
Sbjct: 240 RKADSATTSFLSPHLHFGEV 259