RPSBLAST alignment of GI: 254781170 and MMDB domain: 1u3d_A_1-259
>1u3d_A (A:1-259) Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana}Length = 259
Score = 161 bits (408), Expect = 2e-40
Identities = 57/260 (21%), Positives = 98/260 (37%), Gaps = 11/260 (4%)
Query: 1 MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
+ + +VW R DLR+ DN AL AA VIA+F+ PE+ + +
Sbjct: 5 VSGCGSGGCSIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWW 62
Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
+ SL Q+ SL G + DS+ L +++F+N Y+ + RD
Sbjct: 63 LKNSLAQLDSSLRSLGTCLITKRS---TDSVASLLDVVKSTGASQIFFNHLYDPLSLVRD 119
Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
+ L + I +SF+ +L P + + + + ++ F + + + LP
Sbjct: 120 HRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPP 179
Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
I P F+ + + + G N L F + Y + R
Sbjct: 180 KKIISGDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNR 239
Query: 235 DIPAIQGTSQLSPYLSIGVL 254
TS LSP+L G +
Sbjct: 240 RKADSATTSFLSPHLHFGEV 259