RPSBLAST alignment of GI: 254781170 and protein with PDBid: 1np7
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Length = 489
Score = 336 bits (861), Expect = 8e-93
Identities = 136/479 (28%), Positives = 225/479 (46%), Gaps = 31/479 (6%)
Query: 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYA 63
LVW RNDLR+ D++ L+ A + + AV+ P Q+ Q +S+F+
Sbjct: 7 TVLVWFRNDLRLHDHEPLHRALKSGL-AITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQ 65
Query: 64 SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
S+ + +SL + G + + Q ++Y+R+ E+ ++ L
Sbjct: 66 SVQNLAESLQKVGNKLLVTT----GLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNL 121
Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------ADLRS 176
K+L + K + S L P + + ++T FRK + + + A +
Sbjct: 122 VKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQL 181
Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV---YYYVEQ 233
LP P I+L P ++ +++ F GE L L+ + Y +
Sbjct: 182 LPSPNIKLELTAPPPEFFPQINFDHRSVLA-FQGGETAGLARLQDYFWHGDRLKDYKETR 240
Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
+ +S+ SP+L++G LSPR + +K + + + + EL+WR+F+R
Sbjct: 241 NGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQERVSNDSTHWLIF--ELLWRDFFRF 298
Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
+ Y + + + W +D + W+ G TG+P++DA MR+LN G+M NR
Sbjct: 299 VAQKYGNKLFNRGG-LLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRG 357
Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
R ASFL K+L +DWR G E+F S L+D D+ SN G W + A GND+ FR FN
Sbjct: 358 RQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARD-FRYFNIPK 416
Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466
Q +++DPQGT++RHWLPEL N+P IH P L ++YP P V+ ++
Sbjct: 417 QSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRPCVNFHQS 475