RPSBLAST alignment of GI: 254781170 and protein with PDBid: 1u3d

>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Length = 509

 Score =  256 bits (653), Expect = 1e-68
 Identities = 136/490 (27%), Positives = 222/490 (45%), Gaps = 22/490 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +    +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL
Sbjct: 10  SGGCSIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSL 67

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            Q+  SL   G      + +   DS+  L         +++F+N  Y+   + RD   + 
Sbjct: 68  AQLDSSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKD 124

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L  + I  +SF+  +L  P  + +   + + ++  F +  +      +   LP   I  
Sbjct: 125 VLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIIS 184

Query: 185 TGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                    P  F+   +      +   +  G  N    L  F    +  Y + R     
Sbjct: 185 GDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADS 244

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN----ELIWREFYRHLM 295
             TS LSP+L  G +S R+ ++ ++ + V    +        +N     +  RE+ R++ 
Sbjct: 245 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYIS 304

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F       +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R+
Sbjct: 305 -FNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 363

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G
Sbjct: 364 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEG 423

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH 469
            +FDP G ++R WLPEL+ +PT +IH P +  +        +L  NYPLPIV   +A   
Sbjct: 424 YKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKAR 483

Query: 470 TLNQYYAAKK 479
                    +
Sbjct: 484 LHEALSQMWQ 493