RPSBLAST alignment of GI: 254781170 and protein with PDBid: 3fy4

>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Length = 537
 Score =  245 bits (626), Expect = 1e-65
 Identities = 131/504 (25%), Positives = 202/504 (40%), Gaps = 41/504 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQSHFI 61
           L+W R  LR+ DN AL  A   S+  +  VF+  P                    +  F+
Sbjct: 8   LIWFRKGLRVHDNPALEYASKGSE-FMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFL 66

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +  SL + G      +     +  E L     + +V +L +    +      D 
Sbjct: 67  LESLKDLDSSLKKLGSRLLVFKG----EPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDV 122

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGS--ILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            ++       +      S  L   +  I  +  +    Y  F K   +         +  
Sbjct: 123 KVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVMSY 182

Query: 180 PAIRLTGPVTPSNIPR-------FFDYPFQAIDPMFPIGEQNALHILRKFCK--EKVYYY 230
            ++   G +    I          +    QA    F  GE  AL  L K       V  +
Sbjct: 183 SSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANF 242

Query: 231 VEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            + +  P+      T+ +SPYL  G LS R  +  L+  + D+         S L +L+W
Sbjct: 243 EKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSP-PVSLLGQLLW 301

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF+       P            ++I WN+D  +L AW+ G TG+P IDA M QL   G
Sbjct: 302 REFFYTTAFGTP-NFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWG 360

Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           WMH+  R   A FL + DL + W  G + F   L+D D A NNG W W + +      + 
Sbjct: 361 WMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFY-QFN 419

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPI 460
           RI++P   GK++DP G +IRH+LP L ++P QYI+ P +            +  +YP P+
Sbjct: 420 RIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKPM 479

Query: 461 VDHKKA---CHHTLNQYYAAKKQS 481
           V H  A   C   + + YA  K+ 
Sbjct: 480 VLHDSASKECKRKMGEAYALNKKM 503