RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine
photolyase [Candidatus Liberibacter asiaticus str. psy62]
(483 letters)
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase
{Escherichia coli [TaxId: 562]}
Length = 269
Score = 234 bits (596), Expect = 2e-62
Identities = 161/271 (59%), Positives = 203/271 (74%), Gaps = 2/271 (0%)
Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
P+ E+ A+ LR+FC+ Y +QRD PA++GTS+LS L+ G LSPRQC +RL E
Sbjct: 1 PVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQP 60
Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
WLNELIWREFYRHL+ ++PS+C +PFI WT++++W + LQAW++
Sbjct: 61 Q--ALDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQE 118
Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDLA+N
Sbjct: 119 GKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAAN 178
Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
NGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P W
Sbjct: 179 NGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWAQ 238
Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
K ++L+YP PIV+HK+A TL Y AA+K
Sbjct: 239 KAGVTLDYPQPIVEHKEARVQTLAAYEAARK 269
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 300
Score = 180 bits (456), Expect = 3e-46
Identities = 92/282 (32%), Positives = 142/282 (50%), Gaps = 11/282 (3%)
Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
+ G N L F + Y + R TS LSP+L G +S R+ ++ ++ +
Sbjct: 16 WSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQ 75
Query: 268 VDLLI----KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
V + +L + RE+ R++ F +P + + W D +
Sbjct: 76 VAWANEGNEAGEESVNLFLKSIGLREYSRYIS-FNHPYSHERPLLGHLKFFPWAVDENYF 134
Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
+AW+QG TG+P++DA MR+L GW+H+R+R++ +SF VK L + WR G +YF LLD
Sbjct: 135 KAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDA 194
Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
DL S+ GWQ+ T DS + RI NP +G +FDP G ++R WLPEL+ +PT +IH P
Sbjct: 195 DLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHP 254
Query: 444 HSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
+ + +L NYPLPIV +A +
Sbjct: 255 WNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQ 296
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase
{Synechococcus elongatus [TaxId: 32046]}
Length = 271
Score = 167 bits (423), Expect = 2e-42
Identities = 104/269 (38%), Positives = 138/269 (51%), Gaps = 4/269 (1%)
Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
GE A+ L++FC + Y QR+ PA GTS LSP L G + RQ W
Sbjct: 5 GETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQAWQAASAAHALS 64
Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
+ + + + ++ P+ ++ W L AW Q
Sbjct: 65 RSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQ 124
Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
TG+PI+DAAMRQL GWMHNR RMI ASFL KDL++DWR GE++FM L+DGDLA+NNG
Sbjct: 125 TGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNG 184
Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450
GWQW+AS+G D RIFNP Q K+FD T+I+ WLPEL +V + + + +
Sbjct: 185 GWQWSASSGMDP-KPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIER 243
Query: 451 DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
YP PIV+H Y K
Sbjct: 244 R---GYPAPIVNHNLRQKQFKALYNQLKA 269
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase
{Thermus thermophilus [TaxId: 274]}
Length = 234
Score = 163 bits (413), Expect = 3e-41
Identities = 102/260 (39%), Positives = 143/260 (55%), Gaps = 27/260 (10%)
Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
P+ GE+ AL LR F + K+ Y E+RD +G S+LSPY ++GVLSPR +
Sbjct: 2 PLPEPGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLSPYFALGVLSPRLAAWEAER 61
Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
+ GA W+ EL+WR+F HL+ +P + +P P + W +D L QA
Sbjct: 62 RGGE-------GARKWVAELLWRDFSYHLLYHFPWMAE-RPLDPRFQAFPWQEDEALFQA 113
Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
W +G TG P++DAAMR+L+ G++ NR RM A F VK LL+ W+ EE F LLDGD
Sbjct: 114 WYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDR 173
Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
A N GWQWA G D+ PYFR+FNP +QG+R DP+G +++ W PE +
Sbjct: 174 AVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPEYPSYA--------- 224
Query: 446 WLDKNDLSLNYPLPIVDHKK 465
P+VD ++
Sbjct: 225 ----------PKDPVVDLEE 234
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain
{Synechocystis sp., pcc 6803 [TaxId: 1143]}
Length = 279
Score = 158 bits (400), Expect = 9e-40
Identities = 90/268 (33%), Positives = 143/268 (53%), Gaps = 13/268 (4%)
Query: 208 FPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
F GE L L+ + +++ Y E R+ + +S+ SP+L++G LSPR + +K
Sbjct: 8 FQGGETAGLARLQDYFWHGDRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVK 67
Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
+ + + + EL+WR+F+R + Y + + + + W +D +
Sbjct: 68 RYEQERVSNDSTHWLIF--ELLWRDFFRFVAQKYGNKLFNRGGLLN-KNFPWQEDQVRFE 124
Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
W+ G TG+P++DA MR+LN G+M NR R ASFL K+L +DWR G E+F S L+D D
Sbjct: 125 LWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYD 184
Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
+ SN G W + A GND+ + P +++DPQGT++RHWLPEL N+P IH P
Sbjct: 185 VCSNWGNWNYTAGIGNDARDFRYFNIPKQS-QQYDPQGTYLRHWLPELKNLPGDKIHQPW 243
Query: 445 SWLDKN------DLSLNYPLPIVDHKKA 466
L ++YP P V+ ++
Sbjct: 244 LLSATEQKQWGVQLGVDYPRPCVNFHQS 271
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId:
562]}
Length = 200
Score = 122 bits (306), Expect = 7e-29
Identities = 86/199 (43%), Positives = 127/199 (63%), Gaps = 2/199 (1%)
Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW H +S RQ+ I A L
Sbjct: 1 TTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNG 60
Query: 68 VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
+Q +L++KGI + + +F S+E + C + VT LFYN QYE+NE RD +E+ L
Sbjct: 61 LQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL 120
Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
++ V+C+ FDDSV+LPPG+++ +MYKV+TPF+ A ++ L + + P +R +G
Sbjct: 121 RN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGS 179
Query: 188 VTPSNIPRFFDYPFQAIDP 206
+ PS +YP Q+ D
Sbjct: 180 IEPSPSIT-LNYPRQSFDT 197
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 185
Score = 90.4 bits (223), Expect = 3e-19
Identities = 37/187 (19%), Positives = 68/187 (36%), Gaps = 4/187 (2%)
Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
+VW R DLR+ DN AL AA VIA+F+ PE+ + ++ SL Q+
Sbjct: 3 IVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60
Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
SL G + ++ S+ + ++ + R K +
Sbjct: 61 SLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLT--AQG 118
Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
+ +SF+ +L P + + + + ++ F + + + LP I
Sbjct: 119 IAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKC 178
Query: 191 SNIPRFF 197
P F
Sbjct: 179 VADPLVF 185
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus
[TaxId: 32046]}
Length = 202
Score = 84.7 bits (208), Expect = 1e-17
Identities = 35/194 (18%), Positives = 63/194 (32%), Gaps = 9/194 (4%)
Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
L W R DLR++DN L AA S ++I +F P+ + ++ + ++ L ++Q+
Sbjct: 4 LFWHRRDLRLSDNIGLAAARAQSA-QLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 62
Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
Q G Q + + + R ++
Sbjct: 63 RYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVY---WNQDIEPYGRDRDGQVAAALKTAG 119
Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
+ D +L P IL+ + Y VY PF K PV ++P
Sbjct: 120 IRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPT-----PVATPTELVDLSP 174
Query: 191 SNIPRFFDYPFQAI 204
+ +
Sbjct: 175 EQLTAIAPLLLSEL 188
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc
6803 [TaxId: 1143]}
Length = 204
Score = 83.1 bits (204), Expect = 4e-17
Identities = 43/194 (22%), Positives = 77/194 (39%), Gaps = 9/194 (4%)
Query: 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
LVW RNDLR+ D++ L+ A + A + AV+ P Q+ Q H A+ + L
Sbjct: 6 PTVLVWFRNDLRLHDHEPLHRALKSGLA-ITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQ 64
Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125
Q ++L++ + + Q ++Y+R+ E+ L+++
Sbjct: 65 QSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQ 124
Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL------IQNLVQADLRSLPV 179
+ K + S L P + + ++T FRK + I+ A + LP
Sbjct: 125 LTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQLLPS 184
Query: 180 PAIRLTGPVTPSNI 193
P I+L P
Sbjct: 185 PNIKLELTAPPPEF 198
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus
[TaxId: 274]}
Length = 170
Score = 79.6 bits (195), Expect = 6e-16
Identities = 33/185 (17%), Positives = 55/185 (29%), Gaps = 22/185 (11%)
Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
LVW R DLR+ D+ AL A V+ + + P + +L
Sbjct: 4 LVWHRGDLRLHDHPALLEALAR--GPVVGLVVLDPNNLKTTPRRRAWFLENVRALR---- 57
Query: 71 SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
+ E + + + ++ + RD + + L
Sbjct: 58 ---EAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREALPVP 114
Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
+L P + + Y+VYTPF + + LP P L
Sbjct: 115 -------LHLLPAPHLLPPDLPRAYRVYTPFSRL-----YRGAAPPLPPPE-ALPKGPEE 161
Query: 191 SNIPR 195
IPR
Sbjct: 162 GEIPR 166
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF),
middle domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 199
Score = 27.3 bits (60), Expect = 2.8
Identities = 9/50 (18%), Positives = 18/50 (36%)
Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
P+ F + I P + + +L KE + ++ +P G
Sbjct: 118 KAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYG 167
>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308
{Desulfitobacterium hafniense [TaxId: 49338]}
Length = 251
Score = 26.8 bits (59), Expect = 4.6
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220
L GP TP P F++ Q + A I+
Sbjct: 198 LVGPGTPL-APVLFEHGLQELSGFMVKDNARAFRIVA 233
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea
mays) [TaxId: 4577]}
Length = 289
Score = 26.4 bits (58), Expect = 5.7
Identities = 4/31 (12%), Positives = 9/31 (29%), Gaps = 2/31 (6%)
Query: 23 NKALYAACHNSDAKVIAVFI--ATPEQWRQH 51
N+ + C + + W +H
Sbjct: 229 NRRILRFCDLAGIQYKTYLARHTDRSDWVRH 259
>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048,
catalytic domain {Thermotoga maritima [TaxId: 2336]}
Length = 248
Score = 26.1 bits (56), Expect = 6.0
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 435 VPTQYIHAPHSWLDKNDL 452
+P +Y+H P +D D+
Sbjct: 216 IPLKYMHTPVEMVDPRDV 233
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 26.2 bits (56), Expect = 6.4
Identities = 15/149 (10%), Positives = 30/149 (20%), Gaps = 14/149 (9%)
Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
+ + P + + + + + L
Sbjct: 135 MVFDSKGGFYFTDFRGYSTNPL-GGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWV 193
Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
NRL I + YF ++ + A G V
Sbjct: 194 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRV-- 251
Query: 406 FRIFNPTIQGKRFDPQGTFIRHW-LPELN 433
F+ +G I +P +
Sbjct: 252 ----------LVFNKRGYPIGQILIPGRD 270
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 279
Score = 26.1 bits (56), Expect = 6.5
Identities = 10/153 (6%), Positives = 26/153 (16%), Gaps = 8/153 (5%)
Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
+ + G + + + ++ +
Sbjct: 92 THQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFG 151
Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
H +++ + + L G G
Sbjct: 152 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNG 211
Query: 407 RIF------NPTIQGKRFDPQGTFIRHWLPELN 433
I N + F G I ++
Sbjct: 212 EILIADNHNNFNLT--IFTQDGQLISALESKVK 242
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX,
catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 255
Score = 25.7 bits (56), Expect = 7.4
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 435 VPTQYIHAPHSWLDKNDL 452
VP +YIH+ +D+ D+
Sbjct: 154 VPARYIHSNTEVVDERDV 171
>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049
{Thermotoga maritima [TaxId: 2336]}
Length = 255
Score = 25.7 bits (55), Expect = 8.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 435 VPTQYIHAPHSWLDKNDL 452
P +YIH+P+S +D ND
Sbjct: 217 TPARYIHSPNSIIDLNDY 234
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.444
Gapped
Lambda K H
0.267 0.0445 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,983,280
Number of extensions: 96327
Number of successful extensions: 385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 27
Length of query: 483
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 394
Effective length of database: 1,185,626
Effective search space: 467136644
Effective search space used: 467136644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.7 bits)