Query gi|254781171|ref|YP_003065584.1| hypothetical protein CLIBASIA_05390 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 420
No_of_seqs 141 out of 2777
Neff 7.3
Searched_HMMs 33803
Date Wed Jun 1 23:40:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781171.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2nwl_A GLTPH, glutamate sympo 100.0 0 0 612.0 33.4 401 5-409 2-422 (422)
2 >2nwl_A GLTPH, glutamate sympo 97.7 0.0019 5.7E-08 36.3 14.6 209 1-212 1-225 (422)
3 >2j8s_A ACRB, acriflavine resi 41.9 18 0.00053 14.6 2.8 29 216-244 175-203 (212)
4 >2j8s_A ACRB, acriflavine resi 22.6 39 0.0012 12.8 7.2 30 215-244 195-224 (251)
5 >1kyz_A COMT, caffeic acid 3-O 18.2 49 0.0015 12.2 1.2 17 272-289 2-18 (91)
6 >2v50_A Multidrug resistance p 14.8 60 0.0018 11.8 1.8 31 216-246 175-206 (212)
7 >2v50_A Multidrug resistance p 13.0 68 0.002 11.5 4.8 35 216-250 194-229 (248)
8 >1fp1_D Isoliquiritigenin 2'-O 10.8 80 0.0024 11.1 1.1 17 273-290 2-18 (90)
9 >1exn_A 5'-exonuclease, 5'-nuc 8.6 99 0.0029 10.6 2.6 40 321-365 3-44 (80)
10 >2aqj_A Tryptophan halogenase, 6.7 1.2E+02 0.0036 10.1 0.5 19 271-289 7-25 (201)
No 1
>>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound region, transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* (A:)
Probab=100.00 E-value=0 Score=612.02 Aligned_cols=401 Identities=24% Similarity=0.369 Sum_probs=370.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 64015445449999999999999999996887-----5788878789999999999999999999999832531134665
Q gi|254781171|r 5 KMITLDKQQKAYLLYVSSILIGIFSGTTDYVI-----FNETAEFIVNVFVRIFKFISLPLISLSLIVSLSKCVPEQGMGK 79 (420)
Q Consensus 5 ~~~~~~k~~k~~i~l~~~illGi~~G~~~~~~-----~~~~~~~iG~ifi~lLkmiviPLIf~sii~~I~~l~~~~~~gk 79 (420)
||++..||+++..+++.++++|+++|...+.. ..+|.+++||+|+|++||+++|+||+|++.|+++++ .++.||
T Consensus 2 ~~~~~~~k~sl~~~ilialilGi~lG~~~~~~~~~~~~~~~l~~~G~lfi~lLkm~V~PlVf~sii~~I~~L~-~~~~g~ 80 (422)
T 2nwl_A 2 GLYRKYIEYPVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASIS-PARLGR 80 (422)
T ss_dssp --------CCCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-TTTHHH
T ss_pred CHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCC
T ss_conf 2888862266999999999999999999543220278999999999999999999999999999999997455-110122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 89999999999999999998750123486410110000---122244768989998536640457655113205355666
Q gi|254781171|r 80 LWGKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDV---AVNIGKMNFWNYVANLIPNNVVAPFLESQVIGILLISGS 156 (420)
Q Consensus 80 i~~~ti~~~~~tt~iA~~igl~~~~l~~Pg~~~~~~~~---~~~~~~~~~~~~l~~liP~Ni~~ala~gniL~iivfai~ 156 (420)
++.|++.||+.++.+|+.+|+.++.+++||........ .......+..|.+.+++|+|+++++.++|.+++++++++
T Consensus 81 l~~~~~~~f~~~t~~A~~ig~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~ni~~~~~~~~~~~~~~~ail 160 (422)
T 2nwl_A 81 VGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAII 160 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSCCCCCCCCCC-----CCTHHHHGGGSCSCHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHH
T ss_conf 79999999999999999999999987601333220010332043210269999998255217988745774303678888
Q ss_pred HHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 4213774046------4530179999999999999998987989777878999999985011211101246899999999
Q gi|254781171|r 157 IGIATHFITD------KHIKSSTIVFFEGIHSIFLTITNWVMKIIPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSN 230 (420)
Q Consensus 157 ~Gia~~~~~~------k~~~~~~~~~~~~~~~i~~~ii~~im~l~Pigvf~lia~~~~~~~~~~~l~~l~~~l~~~~~~~ 230 (420)
+|+++....+ ++.++++.+++|+++++++|+++|+|+++|+|+||++++.++++|.+. +.++++++.+++.++
T Consensus 161 ~gi~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~ii~l~P~gvf~lia~~~~~~g~~~-l~~l~~~~~~~~~~~ 239 (422)
T 2nwl_A 161 LGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHV-VGELAKVTAAVYVGL 239 (422)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTTGGGC-CTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHH
T ss_conf 8999998402210345667889999999999999756887776789999999999874135577-888899999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 99999998766441250411001100247889888517655077999999731789988998999999873788505677
Q gi|254781171|r 231 LIQGFIVLPVILYIKGFNPLTIVKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFI 310 (420)
Q Consensus 231 ~i~~~v~~~~i~~~~~~np~~~~k~~~~~~~~Af~T~SS~atlP~~l~~~~~~lgv~~~i~~fviPlG~tinm~G~ai~~ 310 (420)
.++.+++++++.+++|+||++|+|+.+|++++||+|+||+||+|+++||+|| +|+||++++|++|+|+++||||||+|+
T Consensus 240 ~i~~~v~~~~~~~~~~~np~~~~~~~~~~~~~af~T~SS~atlP~~~~~~~k-~gv~~~v~~~v~Plg~~~n~~G~a~~~ 318 (422)
T 2nwl_A 240 TLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKE-MGISEGIYSFTLPLGATINMDGTALYQ 318 (422)
T ss_dssp HHHHHHTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHEEEECCCCCCCHHHHHHHHHH-CCCCCCCCCEECCCCCEECCCCHHHHH
T ss_conf 9999999999999848983888643110143011116665552789999998-499924002024520012057604789
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHHHHHH
Q ss_conf 9999997423697889567999999999998421388641599999999975499999------9999996577641567
Q gi|254781171|r 311 CITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPIN------IMSMILPFYSIVDMFE 384 (420)
Q Consensus 311 ~~~~~f~a~~~gi~l~~~~~~~~i~~~~v~as~g~~gvPg~~~v~~~~vl~~~glP~~------~~~lli~id~i~D~~r 384 (420)
+++++|+||.||++++..|++. +++.+.++|+|++|+||++++....+++.+|+|.| ++++++++||++||+|
T Consensus 319 ~~~~ifia~~~g~~l~~~~~~~-~~~~~~l~s~g~~gvPg~~~v~~~~v~~~~glp~~~~~~~~~i~li~~id~l~D~~r 397 (422)
T 2nwl_A 319 GVCTFFIANALGSHLTVGQQLT-IVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGR 397 (422)
T ss_dssp HHHHHHHHHHHTCCCCSSCCHH-HHHHHHHHHHHSCSSSSHHHHHHHHHHHHHTCCTTSTTHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHH
T ss_conf 9999999987088999899999-999999999861785067999999999984998764115658888874985516608
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999877899999999873000134
Q gi|254781171|r 385 TTLNVWSDSCVTVIVNKSYPKSSDH 409 (420)
Q Consensus 385 T~~NV~gd~~~a~iv~~~~~~~~~~ 409 (420)
|++||+||++++.+++|+++|+|+|
T Consensus 398 T~~Nv~g~~~~~~iv~~~~~~~~~e 422 (422)
T 2nwl_A 398 TMVNVTGDLTGTAIVAKTEGTLVPR 422 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9994887899999999973887899
No 2
>>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound region, transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* (A:)
Probab=97.72 E-value=0.0019 Score=36.26 Aligned_cols=209 Identities=12% Similarity=0.024 Sum_probs=117.5
Q ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98456-401544544999999999999999999-----68875788878789999999-999999999999999832531
Q gi|254781171|r 1 MSLGK-MITLDKQQKAYLLYVSSILIGIFSGTT-----DYVIFNETAEFIVNVFVRIF-KFISLPLISLSLIVSLSKCVP 73 (420)
Q Consensus 1 m~~~~-~~~~~k~~k~~i~l~~~illGi~~G~~-----~~~~~~~~~~~iG~ifi~lL-kmiviPLIf~sii~~I~~l~~ 73 (420)
|.+++ .++++-..++.+.++.|+++|..++.. ...++..--+..-+ .++++ =-+|.--+..++ ....+-+.
T Consensus 1 m~~~~~~~k~sl~~~ilialilGi~lG~~~~~~~~~~~~~~~l~~~G~lfi~-lLkm~V~PlVf~sii~~I-~~L~~~~~ 78 (422)
T 2nwl_A 1 MGLYRKYIEYPVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVR-LLKMLVMPIVFASLVVGA-ASISPARL 78 (422)
T ss_dssp ---------CCCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHH-HHHHHHHHHHHHHHHHHT-TSCTTTTH
T ss_pred CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHCCCCCC
T ss_conf 9288886226699999999999999999954322027899999999999999-999999999999999999-74551101
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCC---CCCCCHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 13466589999999999999999998750123486----410110000122---24476898999853664045765511
Q gi|254781171|r 74 EQGMGKLWGKTVFYTMLTTMLAASVALCTYGLISP----SNMITKPDVAVN---IGKMNFWNYVANLIPNNVVAPFLESQ 146 (420)
Q Consensus 74 ~~~~gki~~~ti~~~~~tt~iA~~igl~~~~l~~P----g~~~~~~~~~~~---~~~~~~~~~l~~liP~Ni~~ala~gn 146 (420)
.+-.+|....-+........++...+..+...-.. ......+....+ .-..-+.+.+.+.+|+|.+.+...++
T Consensus 79 g~l~~~~~~~f~~~t~~A~~ig~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~ni~~~~~~~~~~~~~~~a 158 (422)
T 2nwl_A 79 GRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFA 158 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSCCCCCCCCCC-----CCTHHHHGGGSCSCHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHH
T ss_conf 22799999999999999999999999876013332200103320432102699999982552179887457743036788
Q ss_pred CCHHHHHHHHHHHHHH--HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 3205355666421377--40464530179999999999999998987989777878999999985011
Q gi|254781171|r 147 VIGILLISGSIGIATH--FITDKHIKSSTIVFFEGIHSIFLTITNWVMKIIPIALGSFIAVTILQFKK 212 (420)
Q Consensus 147 iL~iivfai~~Gia~~--~~~~k~~~~~~~~~~~~~~~i~~~ii~~im~l~Pigvf~lia~~~~~~~~ 212 (420)
+++.++++...|.+.. .-+.+.-.+.+..+.+.+.+++..+++ ..++.=++..+-..........
T Consensus 159 il~gi~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~ii~-l~P~gvf~lia~~~~~~g~~~l 225 (422)
T 2nwl_A 159 IILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQ-YAPIGVFALIAYVMAEQGVHVV 225 (422)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHTTTGGGCC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHH
T ss_conf 888999998402210345667889999999999999756887776-7899999999998741355778
No 3
>>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ... (A:1-37,A:330-504)
Probab=41.86 E-value=18 Score=14.65 Aligned_cols=29 Identities=7% Similarity=0.154 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10124689999999999999998766441
Q gi|254781171|r 216 ISGLGEYLSVVILSNLIQGFIVLPVILYI 244 (420)
Q Consensus 216 l~~l~~~l~~~~~~~~i~~~v~~~~i~~~ 244 (420)
+..++...........++.+.+.|.+..+
T Consensus 175 f~~fg~~~~~~i~~sll~al~llPaLl~~ 203 (212)
T 2j8s_A 175 YRQFSITIVSAMALSVLVALILTPALCAT 203 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 14205443145787877776221778887
No 4
>>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ... (A:505-567,A:868-1055)
Probab=22.60 E-value=39 Score=12.79 Aligned_cols=30 Identities=10% Similarity=0.262 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 110124689999999999999998766441
Q gi|254781171|r 215 NISGLGEYLSVVILSNLIQGFIVLPVILYI 244 (420)
Q Consensus 215 ~l~~l~~~l~~~~~~~~i~~~v~~~~i~~~ 244 (420)
.+.+++..+..-.+...+..+.+.|.++..
T Consensus 195 ~~~~~gi~~~~gll~s~i~~l~~~Pal~~~ 224 (251)
T 2j8s_A 195 AQNAVGTGVMGGMVTATVLAIFFVPVFFVV 224 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 766569999999999999999999999999
No 5
>>1kyz_A COMT, caffeic acid 3-O-methyltransferase; lignin, ferulic acid, methylation; HET: SAH FER; 2.20A {Medicago sativa} (A:30-120)
Probab=18.17 E-value=49 Score=12.25 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHCCCCCHH
Q ss_conf 077999999731789988
Q gi|254781171|r 272 TLPVTMRTAEKNLNISPE 289 (420)
Q Consensus 272 tlP~~l~~~~~~lgv~~~ 289 (420)
..|..+||+-| +|+++-
T Consensus 2 v~smaLk~Ave-LgI~di 18 (91)
T 1kyz_A 2 VLPMILKSALE-LDLLEI 18 (91)
T ss_dssp HHHHHHHHHHH-TTHHHH
T ss_pred HHHHHHHHHHH-CCCHHH
T ss_conf 99999999998-782889
No 6
>>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01} (A:1-37,A:330-504)
Probab=14.77 E-value=60 Score=11.77 Aligned_cols=31 Identities=10% Similarity=0.156 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC
Q ss_conf 1012468999999999999999876644-125
Q gi|254781171|r 216 ISGLGEYLSVVILSNLIQGFIVLPVILY-IKG 246 (420)
Q Consensus 216 l~~l~~~l~~~~~~~~i~~~v~~~~i~~-~~~ 246 (420)
+.+++...........++.+...|.++. +.|
T Consensus 175 ~~~fg~~~~~~il~s~i~altllPaL~~~l~r 206 (212)
T 2v50_A 175 YRQFSITIVSAMALSVIVALILTPALCATMLK 206 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 03344555455688999999999988888427
No 7
>>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01} (A:505-566,A:867-1052)
Probab=12.99 E-value=68 Score=11.48 Aligned_cols=35 Identities=6% Similarity=0.062 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCC
Q ss_conf 10124689999999999999998766441-250411
Q gi|254781171|r 216 ISGLGEYLSVVILSNLIQGFIVLPVILYI-KGFNPL 250 (420)
Q Consensus 216 l~~l~~~l~~~~~~~~i~~~v~~~~i~~~-~~~np~ 250 (420)
+.+++..+..-.+...+..+.+.|.++.. .+...+
T Consensus 194 ~~~fg~~~~~gil~s~i~~l~l~Pal~~~~~~~~~~ 229 (248)
T 2v50_A 194 QHAIGTGVIGGMVTATVLAIFWVPLFYVAVSTLFKD 229 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 530699999999999999999999999999997314
No 8
>>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} (D:36-125)
Probab=10.83 E-value=80 Score=11.08 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=9.9
Q ss_pred HHHHHHHHHHCCCCCHHH
Q ss_conf 779999997317899889
Q gi|254781171|r 273 LPVTMRTAEKNLNISPEV 290 (420)
Q Consensus 273 lP~~l~~~~~~lgv~~~i 290 (420)
.|..+||+-| +|+++-+
T Consensus 2 ~pmaLk~Aie-LgI~d~I 18 (90)
T 1fp1_D 2 YPAVLNAAID-LNLFEII 18 (90)
T ss_dssp HHHHHHHHHH-TTHHHHH
T ss_pred HHHHHHHHHH-CCCHHHH
T ss_conf 9999999998-7818999
No 9
>>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} (A:182-261)
Probab=8.58 E-value=99 Score=10.60 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=25.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHH--HHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 697889567999999999998--421388641599999999975499
Q gi|254781171|r 321 NGIEATFSTLFLWILMASVIS--AIGTAGVPMGCFFLSASLLTNMGI 365 (420)
Q Consensus 321 ~gi~l~~~~~~~~i~~~~v~a--s~g~~gvPg~~~v~~~~vl~~~gl 365 (420)
||++ ++++.-. .+... |-..+||||-|-....-++...|=
T Consensus 3 ~Gv~---p~q~~d~--~~L~GD~sD~ipGV~GIG~ktA~~Li~~~gs 44 (80)
T 1exn_A 3 NVDD---VEQFISL--KAIXGDLGDNIRGVEGIGAKRGYNIIREFGN 44 (80)
T ss_dssp SSSS---HHHHHHH--HHHHCBGGGTBCCCTTCCHHHHHHHHHHHCS
T ss_pred CCCC---HHHHHHH--HHHCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 7998---9999999--9971983136899997679999999999599
No 10
>>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* (A:44-163,A:240-320)
Probab=6.68 E-value=1.2e+02 Score=10.09 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHCCCCCHH
Q ss_conf 5077999999731789988
Q gi|254781171|r 271 GTLPVTMRTAEKNLNISPE 289 (420)
Q Consensus 271 atlP~~l~~~~~~lgv~~~ 289 (420)
||+|...+...+.+|++|+
T Consensus 7 aTiP~i~~~l~~~LGIdE~ 25 (201)
T 2aqj_A 7 ATIPSLQKVFFDFLGIPER 25 (201)
T ss_dssp ECCTHHHHHTHHHHTCCHH
T ss_pred CHHHHHHHHHHHHCCCCHH
T ss_conf 2477699999998499979
Done!