HHSEARCH alignment of GI: 254781171 and SCOP domain: d2nwwa1

Alignment
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=100.00  E-value=0  Score=623.45  Aligned_cols=387  Identities=26%  Similarity=0.403  Sum_probs=347.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             449999999999999999996-8875788878789999999999999999999999832531134665899999999999
Q gi|254781171|r   13 QKAYLLYVSSILIGIFSGTTD-YVIFNETAEFIVNVFVRIFKFISLPLISLSLIVSLSKCVPEQGMGKLWGKTVFYTMLT   91 (420)
Q Consensus        13 ~k~~i~l~~~illGi~~G~~~-~~~~~~~~~~iG~ifi~lLkmiviPLIf~sii~~I~~l~~~~~~gki~~~ti~~~~~t   91 (420)
                      +|+.++++.|+++|+.+|... .....+|.+++||+|+|+|||+++|+||+|++.|++++++ ++.||++.|++.||+.|
T Consensus         3 ~rili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~-~~~gkl~~~ti~~~l~t   81 (405)
T d2nwwa1           3 QKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISP-ARLGRVGVKIVVYYLLT   81 (405)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTT-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHCCHHHHHHHHHHHHH
T ss_conf             89999999999999997222212789999998999999999999999999999999974550-10020899999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999987501234864101100001---22244768989998536640457655113205355666421377404645
Q gi|254781171|r   92 TMLAASVALCTYGLISPSNMITKPDVA---VNIGKMNFWNYVANLIPNNVVAPFLESQVIGILLISGSIGIATHFITDKH  168 (420)
Q Consensus        92 t~iA~~igl~~~~l~~Pg~~~~~~~~~---~~~~~~~~~~~l~~liP~Ni~~ala~gniL~iivfai~~Gia~~~~~~k~  168 (420)
                      |++|+.+|+.++..++||.+.......   ...+..+..|++.+++|+|++++++++|++|+++||+++|+|+....+++
T Consensus        82 t~iA~~igl~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~l~~~iP~Ni~~al~~~~~l~vi~fail~Gial~~~~~~~  161 (405)
T d2nwwa1          82 SAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSE  161 (405)
T ss_dssp             HHHHHHHHHHHHHHSCSCCCCCCCCCCCCCCCCCCCCHHHHHGGGSCSCHHHHHHSCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999998601333220000000143110018999997055878999646786303567888899999850220


Q ss_pred             C------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3------0179999999999999998987989777878999999985011211101246899999999999999987664
Q gi|254781171|r  169 I------KSSTIVFFEGIHSIFLTITNWVMKIIPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPVIL  242 (420)
Q Consensus       169 ~------~~~~~~~~~~~~~i~~~ii~~im~l~Pigvf~lia~~~~~~~~~~~l~~l~~~l~~~~~~~~i~~~v~~~~i~  242 (420)
                      .      .+++.+++|+++++++|+++|+|+++|+|+|++++..++++|.+. +.++++|+.+++.++++|.+++++++.
T Consensus       162 ~~~~~~~~~~l~~~~~~l~~v~~kii~~im~laPigvf~l~a~~~~~~g~~~-l~~l~~~~~~~~~~~~l~~~~~~~i~~  240 (405)
T d2nwwa1         162 NEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHV-VGELAKVTAAVYVGLTLQILLVYFVLL  240 (405)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTGGGC-CTHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             0345667889999999999999999898887778889999998753334555-567899999999999999888889999


Q ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             41250411001100247889888517655077999999731789988998999999873788505677999999742369
Q gi|254781171|r  243 YIKGFNPLTIVKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITLIYVMQNNG  322 (420)
Q Consensus       243 ~~~~~np~~~~k~~~~~~~~Af~T~SS~atlP~~l~~~~~~lgv~~~i~~fviPlG~tinm~G~ai~~~~~~~f~a~~~g  322 (420)
                      +++|+||++|+|+++|++++||+|+||+||+|+++||+| |+|+||++++|++|+|+|+||||+|+|++++++|++|.||
T Consensus       241 ~~~~~~p~~~~~~~~~~~~~Af~T~SS~atlP~~~~~~~-~~gv~~~i~~fvlPlgatin~~G~a~~~~~~~~f~a~~~g  319 (405)
T d2nwwa1         241 KIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAK-EMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALG  319 (405)
T ss_dssp             HTTTCCHHHHHHHHHHHHHHHHHHCCTGGGHHHHHHHHH-TTTCCTTTHHHHTTTTSSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCCHHHHHHHCCCHHHEEEECCCCCCCCHHHHHHHH-HCCCCCCCCCEECCCCHHEECCCCHHHHHHHHHHHHHHCC
T ss_conf             982898488843223104212001665566178999999-7599935201023630210036412489999999998719


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             788956799999999999842138864159999999997549999------99999996577641567899987789999
Q gi|254781171|r  323 IEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPI------NIMSMILPFYSIVDMFETTLNVWSDSCVT  396 (420)
Q Consensus       323 i~l~~~~~~~~i~~~~v~as~g~~gvPg~~~v~~~~vl~~~glP~------~~~~lli~id~i~D~~rT~~NV~gd~~~a  396 (420)
                      ++++.+++. .+++.++++|+|++|+||++++++..+++++|+|.      |++++++++||++||+||++||+||++++
T Consensus       320 ~~l~~~~~~-~~~~~~~l~s~g~~gvPg~~~v~~~~vl~~~glP~~~~~~~~~i~li~~id~l~D~~rT~~Nv~gd~~~a  398 (405)
T d2nwwa1         320 SHLTVGQQL-TIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGT  398 (405)
T ss_dssp             CCCCSSTTH-HHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             799989999-9999999999861786167999999999986998864105658888874985505508988287765888


Q ss_pred             HHHHHHH
Q ss_conf             9999873
Q gi|254781171|r  397 VIVNKSY  403 (420)
Q Consensus       397 ~iv~~~~  403 (420)
                      .+++|+|
T Consensus       399 ~iv~k~e  405 (405)
T d2nwwa1         399 AIVAKTE  405 (405)
T ss_dssp             HHHHHHC
T ss_pred             HEEECCC
T ss_conf             4133579


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Proton glutamate symport protein
superfamily: Proton glutamate symport protein
family: Proton glutamate symport protein
domain: Proton glutamate symport protein
species: Pyrococcus horikoshii [TaxId: 53953]