Query gi|254781171|ref|YP_003065584.1| hypothetical protein CLIBASIA_05390 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 420 No_of_seqs 141 out of 2777 Neff 7.3 Searched_HMMs 13730 Date Wed Jun 1 12:02:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781171.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2nwwa1 f.49.1.1 (A:12-416) Pr 100.0 0 0 623.4 33.7 387 13-403 3-405 (405) 2 d1fp1d1 a.4.5.29 (D:19-128) Ch 31.9 6.1 0.00044 15.1 0.6 23 268-291 14-36 (110) 3 d1kyza1 a.4.5.29 (A:13-119) Ca 27.0 9.7 0.00071 13.9 1.0 23 268-291 15-37 (107) 4 d1whca_ a.5.2.1 (A:) UBA/UBX 3 8.2 42 0.003 10.5 1.6 30 266-296 2-31 (64) 5 d1xo1a1 a.60.7.1 (A:186-290) T 5.2 66 0.0048 9.4 1.7 27 338-364 12-40 (105) 6 d1s2xa_ a.47.3.1 (A:) Cag-Z {H 4.8 73 0.0053 9.2 0.4 26 126-151 124-149 (180) 7 d1o26a_ d.207.1.1 (A:) Thy1 ho 4.2 28 0.002 11.5 -2.6 24 284-307 141-164 (219) 8 d1t98a1 a.4.5.65 (A:8-118) Chr 3.7 1E+02 0.0074 8.4 2.0 15 363-377 15-29 (111) 9 d1efaa1 a.35.1.5 (A:2-60) Lac 3.6 1E+02 0.0076 8.3 1.3 22 274-295 2-23 (59) 10 d2gyc31 a.108.1.1 (3:2-48) Rib 3.2 1.2E+02 0.0088 8.0 1.4 12 276-287 21-32 (47) No 1 >d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]} Probab=100.00 E-value=0 Score=623.45 Aligned_cols=387 Identities=26% Similarity=0.403 Sum_probs=347.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 449999999999999999996-8875788878789999999999999999999999832531134665899999999999 Q gi|254781171|r 13 QKAYLLYVSSILIGIFSGTTD-YVIFNETAEFIVNVFVRIFKFISLPLISLSLIVSLSKCVPEQGMGKLWGKTVFYTMLT 91 (420) Q Consensus 13 ~k~~i~l~~~illGi~~G~~~-~~~~~~~~~~iG~ifi~lLkmiviPLIf~sii~~I~~l~~~~~~gki~~~ti~~~~~t 91 (420) +|+.++++.|+++|+.+|... .....+|.+++||+|+|+|||+++|+||+|++.|++++++ ++.||++.|++.||+.| T Consensus 3 ~rili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~-~~~gkl~~~ti~~~l~t 81 (405) T d2nwwa1 3 QKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISP-ARLGRVGVKIVVYYLLT 81 (405) T ss_dssp SHHHHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTT-TTHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHCCHHHHHHHHHHHHH T ss_conf 89999999999999997222212789999998999999999999999999999999974550-10020899999999999 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC Q ss_conf 999999987501234864101100001---22244768989998536640457655113205355666421377404645 Q gi|254781171|r 92 TMLAASVALCTYGLISPSNMITKPDVA---VNIGKMNFWNYVANLIPNNVVAPFLESQVIGILLISGSIGIATHFITDKH 168 (420) Q Consensus 92 t~iA~~igl~~~~l~~Pg~~~~~~~~~---~~~~~~~~~~~l~~liP~Ni~~ala~gniL~iivfai~~Gia~~~~~~k~ 168 (420) |++|+.+|+.++..++||.+....... ...+..+..|++.+++|+|++++++++|++|+++||+++|+|+....+++ T Consensus 82 t~iA~~igl~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~l~~~iP~Ni~~al~~~~~l~vi~fail~Gial~~~~~~~ 161 (405) T d2nwwa1 82 SAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSE 161 (405) T ss_dssp HHHHHHHHHHHHHHSCSCCCCCCCCCCCCCCCCCCCCHHHHHGGGSCSCHHHHHHSCCHHHHHHHHHHHHHHHHHHTTCS T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 99999999999998601333220000000143110018999997055878999646786303567888899999850220 Q ss_pred C------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3------0179999999999999998987989777878999999985011211101246899999999999999987664 Q gi|254781171|r 169 I------KSSTIVFFEGIHSIFLTITNWVMKIIPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPVIL 242 (420) Q Consensus 169 ~------~~~~~~~~~~~~~i~~~ii~~im~l~Pigvf~lia~~~~~~~~~~~l~~l~~~l~~~~~~~~i~~~v~~~~i~ 242 (420) . .+++.+++|+++++++|+++|+|+++|+|+|++++..++++|.+. +.++++|+.+++.++++|.+++++++. T Consensus 162 ~~~~~~~~~~l~~~~~~l~~v~~kii~~im~laPigvf~l~a~~~~~~g~~~-l~~l~~~~~~~~~~~~l~~~~~~~i~~ 240 (405) T d2nwwa1 162 NEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHV-VGELAKVTAAVYVGLTLQILLVYFVLL 240 (405) T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTGGGC-CTHHHHHHHHHHHHHHHHHHHTHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 0345667889999999999999999898887778889999998753334555-567899999999999999888889999 Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC Q ss_conf 41250411001100247889888517655077999999731789988998999999873788505677999999742369 Q gi|254781171|r 243 YIKGFNPLTIVKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITLIYVMQNNG 322 (420) Q Consensus 243 ~~~~~np~~~~k~~~~~~~~Af~T~SS~atlP~~l~~~~~~lgv~~~i~~fviPlG~tinm~G~ai~~~~~~~f~a~~~g 322 (420) +++|+||++|+|+++|++++||+|+||+||+|+++||+| |+|+||++++|++|+|+|+||||+|+|++++++|++|.|| T Consensus 241 ~~~~~~p~~~~~~~~~~~~~Af~T~SS~atlP~~~~~~~-~~gv~~~i~~fvlPlgatin~~G~a~~~~~~~~f~a~~~g 319 (405) T d2nwwa1 241 KIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAK-EMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALG 319 (405) T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHHCCTGGGHHHHHHHHH-TTTCCTTTHHHHTTTTSSSCCHHHHHHHHHHHHHHHHHHT T ss_pred HHCCCCHHHHHHHCCCHHHEEEECCCCCCCCHHHHHHHH-HCCCCCCCCCEECCCCHHEECCCCHHHHHHHHHHHHHHCC T ss_conf 982898488843223104212001665566178999999-7599935201023630210036412489999999998719 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 788956799999999999842138864159999999997549999------99999996577641567899987789999 Q gi|254781171|r 323 IEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPI------NIMSMILPFYSIVDMFETTLNVWSDSCVT 396 (420) Q Consensus 323 i~l~~~~~~~~i~~~~v~as~g~~gvPg~~~v~~~~vl~~~glP~------~~~~lli~id~i~D~~rT~~NV~gd~~~a 396 (420) ++++.+++. .+++.++++|+|++|+||++++++..+++++|+|. |++++++++||++||+||++||+||++++ T Consensus 320 ~~l~~~~~~-~~~~~~~l~s~g~~gvPg~~~v~~~~vl~~~glP~~~~~~~~~i~li~~id~l~D~~rT~~Nv~gd~~~a 398 (405) T d2nwwa1 320 SHLTVGQQL-TIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGT 398 (405) T ss_dssp CCCCSSTTH-HHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 799989999-9999999999861786167999999999986998864105658888874985505508988287765888 Q ss_pred HHHHHHH Q ss_conf 9999873 Q gi|254781171|r 397 VIVNKSY 403 (420) Q Consensus 397 ~iv~~~~ 403 (420) .+++|+| T Consensus 399 ~iv~k~e 405 (405) T d2nwwa1 399 AIVAKTE 405 (405) T ss_dssp HHHHHHC T ss_pred HEEECCC T ss_conf 4133579 No 2 >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Probab=31.87 E-value=6.1 Score=15.07 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=16.0 Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHH Q ss_conf 765507799999973178998899 Q gi|254781171|r 268 SSAGTLPVTMRTAEKNLNISPEVS 291 (420) Q Consensus 268 SS~atlP~~l~~~~~~lgv~~~i~ 291 (420) ++..++|..+||+-+ +|+++-+. T Consensus 14 ~~~~v~pMaLk~Aie-LgI~diI~ 36 (110) T d1fp1d1 14 TTNLVYPAVLNAAID-LNLFEIIA 36 (110) T ss_dssp HHTTHHHHHHHHHHH-TTHHHHHH T ss_pred HHHHHHHHHHHHHHH-CCCHHHHH T ss_conf 976089899999999-38799999 No 3 >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Probab=27.05 E-value=9.7 Score=13.95 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=16.8 Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHH Q ss_conf 765507799999973178998899 Q gi|254781171|r 268 SSAGTLPVTMRTAEKNLNISPEVS 291 (420) Q Consensus 268 SS~atlP~~l~~~~~~lgv~~~i~ 291 (420) ++....|..+||+-+ +|+++-+. T Consensus 15 ~~~~v~pmaLk~Aie-LgI~DiI~ 37 (107) T d1kyza1 15 ASASVLPMILKSALE-LDLLEIIA 37 (107) T ss_dssp HTTTHHHHHHHHHHH-TTHHHHHH T ss_pred HHHHHHHHHHHHHHH-CCCHHHHH T ss_conf 975289999999998-18799998 No 4 >d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} Probab=8.22 E-value=42 Score=10.51 Aligned_cols=30 Identities=13% Similarity=0.188 Sum_probs=15.8 Q ss_pred HCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 5176550779999997317899889989999 Q gi|254781171|r 266 SKSSAGTLPVTMRTAEKNLNISPEVSRSILP 296 (420) Q Consensus 266 T~SS~atlP~~l~~~~~~lgv~~~i~~fviP 296 (420) |++|.+.=|-.++.+.+ ||.+++.+.-.+= T Consensus 2 ss~~s~~d~~~l~~L~~-MGF~~~~a~~AL~ 31 (64) T d1whca_ 2 SSGSSGAELTALESLIE-MGFPRGRAEKALA 31 (64) T ss_dssp CCCCCCCCCCHHHHHHT-TTCCHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHH-CCCCHHHHHHHHH T ss_conf 88877559999999999-5999999999999 No 5 >d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]} Probab=5.23 E-value=66 Score=9.40 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=20.1 Q ss_pred HHHH--HHCCCCCCHHHHHHHHHHHHHCC Q ss_conf 9998--42138864159999999997549 Q gi|254781171|r 338 SVIS--AIGTAGVPMGCFFLSASLLTNMG 364 (420) Q Consensus 338 ~v~a--s~g~~gvPg~~~v~~~~vl~~~g 364 (420) +... |-+.+||||-|--...-++...| T Consensus 12 aL~GD~sDnipGV~GiG~KtA~kli~~~g 40 (105) T d1xo1a1 12 AIMGDLGDNIRGVEGIGAKRGYNIIREFG 40 (105) T ss_dssp HHHCBGGGTBCCCTTCCHHHHHHHHHHHC T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHCC T ss_conf 99097645876758847899999998702 No 6 >d1s2xa_ a.47.3.1 (A:) Cag-Z {Helicobacter pylori [TaxId: 210]} Probab=4.84 E-value=73 Score=9.17 Aligned_cols=26 Identities=23% Similarity=0.680 Sum_probs=18.3 Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHH Q ss_conf 89899985366404576551132053 Q gi|254781171|r 126 FWNYVANLIPNNVVAPFLESQVIGIL 151 (420) Q Consensus 126 ~~~~l~~liP~Ni~~ala~gniL~ii 151 (420) +.|.+.+..|..-.-+|.+|||+++- T Consensus 124 isdlvasylpreylppfidgnmmgva 149 (180) T d1s2xa_ 124 ISDLVASYLPREYLPPFIDGNMMGVA 149 (180) T ss_dssp HHHHHHTTSCGGGCCTTCCHHHHHHH T ss_pred HHHHHHHHCCHHHCCCCCCCCCCEEE T ss_conf 99999974848657986378501010 No 7 >d1o26a_ d.207.1.1 (A:) Thy1 homologue {Thermotoga maritima [TaxId: 2336]} Probab=4.19 E-value=28 Score=11.47 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=16.9 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCH Q ss_conf 789988998999999873788505 Q gi|254781171|r 284 LNISPEVSRSILPFCTSINMNGCA 307 (420) Q Consensus 284 lgv~~~i~~fviPlG~tinm~G~a 307 (420) .|++++-|++++|.+...+.--++ T Consensus 141 ~Gva~E~AR~vLP~~~~T~~~~t~ 164 (219) T d1o26a_ 141 SGVPREVARIVLPLNLYTRFFWTV 164 (219) T ss_dssp TTCCHHHHGGGSBTTBEEEEEEEE T ss_pred CCCCHHHHHHHHHCCCCEEEEEEE T ss_conf 799706677776415545999995 No 8 >d1t98a1 a.4.5.65 (A:8-118) Chromosome partition protein MukF (KicB), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=3.71 E-value=1e+02 Score=8.39 Aligned_cols=15 Identities=20% Similarity=0.618 Sum_probs=6.4 Q ss_pred CCCCHHHHHHHHHHH Q ss_conf 499999999999657 Q gi|254781171|r 363 MGIPINIMSMILPFY 377 (420) Q Consensus 363 ~glP~~~~~lli~id 377 (420) +.+|.|-++.+++|. T Consensus 15 L~L~terLaFLlaIa 29 (111) T d1t98a1 15 ISLPVDRLSFLLAVA 29 (111) T ss_dssp EEECHHHHHHHHHHH T ss_pred ECCCHHHHHHHHHHH T ss_conf 038689999999999 No 9 >d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=3.63 E-value=1e+02 Score=8.33 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=0.0 Q ss_pred HHHHHHHHHCCCCCHHHHHHHH Q ss_conf 7999999731789988998999 Q gi|254781171|r 274 PVTMRTAEKNLNISPEVSRSIL 295 (420) Q Consensus 274 P~~l~~~~~~lgv~~~i~~fvi 295 (420) |+||+..-+..|++....|-++ T Consensus 2 ~~Ti~diA~~agvS~sTVSr~l 23 (59) T d1efaa1 2 PVTLYDVAEYAGVSYQTVSRVV 23 (59) T ss_dssp CCCHHHHHHTTTSCHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHH T ss_conf 8889999989797999999997 No 10 >d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]} Probab=3.24 E-value=1.2e+02 Score=7.99 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=0.0 Q ss_pred HHHHHHHCCCCC Q ss_conf 999997317899 Q gi|254781171|r 276 TMRTAEKNLNIS 287 (420) Q Consensus 276 ~l~~~~~~lgv~ 287 (420) .++..|+|+|++ T Consensus 21 Li~amEEKFGVs 32 (47) T d2gyc31 21 LISAMEEKFGVS 32 (47) T ss_dssp HHHHHHHHTCTT T ss_pred HHHHHHHHHCCC T ss_conf 999999985843 Done!