RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781171|ref|YP_003065584.1| hypothetical protein CLIBASIA_05390 [Candidatus Liberibacter asiaticus str. psy62] (420 letters) >gnl|CDD|144095 pfam00375, SDF, Sodium:dicarboxylate symporter family. Length = 387 Score = 257 bits (660), Expect = 3e-69 Identities = 127/387 (32%), Positives = 213/387 (55%), Gaps = 11/387 (2%) Query: 23 ILIGIFSGTTDYVIFNETA---EFIVNVFVRIFKFISLPLISLSLIVSLSKCVPEQGMGK 79 ILIG+ G + F E A + + ++F+ + K + +PL+ S++ ++ + +GK Sbjct: 5 ILIGLVLGVLLGLFFPEVAGWLKPLGDIFINLLKMLVVPLVFFSIVSGIASLGDGKKLGK 64 Query: 80 LWGKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDVAVNIGKM---NFWNYVANLIPN 136 L GKT+ Y ++TT +AA + L L P + A + + +++ N+IP+ Sbjct: 65 LGGKTLLYFLVTTAIAAIIGLLVALLFQPGVGLLISAAAESAQASESPSLLDFLLNIIPS 124 Query: 137 NVVAPFLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEGIHSIFLTITNWVMKIIP 196 N+ A E V+ +++ + GIA + +K + F E ++ I + + NWVMK+ P Sbjct: 125 NIFAALAEGNVLQVIVFAILFGIALAALGEKG--KPLLKFLESLNEIIMKVVNWVMKLAP 182 Query: 197 IALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPVILYI-KGFNPLTIVKG 255 I + + IA T+ F G + LG+++ V L+ I F+V P++L G NP +K Sbjct: 183 IGVFALIANTVGTFGLGT-LGSLGKFVLTVYLALAIHLFVVYPLLLKFLTGLNPFKFLKK 241 Query: 256 MFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITLI 315 + PAL AF + SSA TLPVT+ AEKNL +S ++ +LP +INM+G A ++ + I Sbjct: 242 ILPALLTAFSTASSAATLPVTLECAEKNLGVSKSIASFVLPLGATINMDGTAIYLAVAAI 301 Query: 316 YVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPINIMSMILP 375 ++ Q G++ + L L IL A +++IG AGVP G A +L+ +G+P+ +++IL Sbjct: 302 FIAQAYGVDLSLGQLLLLILTA-TLASIGAAGVPGGGLVALALVLSALGLPVEGIALILA 360 Query: 376 FYSIVDMFETTLNVWSDSCVTVIVNKS 402 I+DMF T LNV D+ VIV K Sbjct: 361 IDRILDMFRTALNVTGDAVAAVIVAKL 387 >gnl|CDD|31492 COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]. Length = 415 Score = 204 bits (520), Expect = 5e-53 Identities = 106/393 (26%), Positives = 205/393 (52%), Gaps = 12/393 (3%) Query: 23 ILIGIFSGTTDYVIFNETAEFIV-----NVFVRIFKFISLPLISLSLIVSLSKCVPEQGM 77 +LIG+ G + E I ++F+++ K I +PL+ +L++ ++ + + Sbjct: 12 VLIGLILGILVGLFLPELGAAIYLKPLGDIFIKLIKMIIIPLVFFTLVLGIASLGDLKKL 71 Query: 78 GKLWGKTVFYTMLTTMLAASVALCTYGLISP---SNMITKPDVAVNIGKMNFWNYVANLI 134 G+L GKT+ Y ++TT LA ++ L ++ P N+ +++ +++ ++I Sbjct: 72 GRLGGKTLIYFLVTTTLAIAIGLVVANVLQPGAGINIDPATLDTGAESEVSILDFLLDII 131 Query: 135 PNNVVAPFLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEGIHSIFLTITNWVMKI 194 P N+ E V+ IL + G+A + +K K FE + +TN+VM++ Sbjct: 132 PTNIFGALAEGNVLQILFFAILFGLALAALGEKG-KPPVENLFESLSEAMFKVTNFVMRL 190 Query: 195 IPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPVILY-IKGFNPLTIV 253 PI + +A T+ ++ G ++ LG+ + V L L+ F+VL ++L + GF+P + Sbjct: 191 APIGVFGLMAFTVAKYGFG-SLLSLGKLVLAVYLGLLLFVFVVLGLLLKLLSGFSPFKFL 249 Query: 254 KGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICIT 313 + + AL +AF + SS TLPVTM AEK+L + + ++P + N++G A + + Sbjct: 250 RYISEALLLAFSTSSSEATLPVTMEKAEKSLGVPKSIVSFVVPLGYTFNLDGTAIYQTLA 309 Query: 314 LIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPINIMSMI 373 +++ Q GI + +L+A ++++ G AGVP G + A+ L+++G+P+ +++I Sbjct: 310 ALFIAQAYGIPLSLGQQLTLLLVA-MLASKGAAGVPGGGLVVLAATLSSVGLPLEGLALI 368 Query: 374 LPFYSIVDMFETTLNVWSDSCVTVIVNKSYPKS 406 L +DM T NV D+ TV+V K + Sbjct: 369 LGIDRFLDMARTATNVTGDAVATVVVAKWEGEE 401 >gnl|CDD|38991 KOG3787, KOG3787, KOG3787, Glutamate/aspartate and neutral amino acid transporters [Amino acid transport and metabolism]. Length = 507 Score = 156 bits (397), Expect = 9e-39 Identities = 120/461 (26%), Positives = 206/461 (44%), Gaps = 46/461 (9%) Query: 1 MSLGKMITLDKQQKAYLLYVSSILIGIFSGTT--DYVIFNETAEFIV---NVFVRIFKFI 55 ++ + ++ LL VS +++G+ G + + +I + +R+ K + Sbjct: 4 GRGERVRSFLRENLLLLLTVSGVVLGVLLGFLLRPLSLSPDEIMYISFPGELLMRMLKMM 63 Query: 56 SLPLISLSLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGLISPSNMITK- 114 LPLI SLI L+ + G+L + V Y M TT++A + + +I P + K Sbjct: 64 ILPLIVSSLISGLASLDAKAS-GRLGMRAVVYYMSTTIIAVILGIALVLIIHPGDPTKKN 122 Query: 115 --PDVAVNIGKMN----FWNYVANLIPNNVV-APFLESQVIGILLISGSIGIATHFITDK 167 + ++ F + + N+ P N+V A F + Q + S G AT K Sbjct: 123 ELGREGLIDSNVSTLDTFLDLIRNMFPENLVQATFQQYQTKYKPVTKASPGNATEEALPK 182 Query: 168 HIKSST-----------------------------IVFFEGIHSIFLTITNWVMKIIPIA 198 + T + FF ++ + + +W+M P+ Sbjct: 183 GVPGYTDGMNVLGLVVFCIVFGIVIGKLGEKGQVLVDFFNSLNEAIMKLVSWIMWYSPVG 242 Query: 199 LGSFIAVTILQFKK-GLNISGLGEYLSVVILSNLIQGFIVLPVILY-IKGFNPLTIVKGM 256 + IA IL+ + G+ LG Y+ VIL I GFIVLP+I + + NP + G+ Sbjct: 243 ILFLIAGKILEMEDLGVTARQLGMYVVTVILGLFIHGFIVLPLIYFVVTRKNPFRFIAGL 302 Query: 257 FPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITLIY 316 ALA AF + SS+ TLP+T + E+NL + V+R +LP +INM+G A + + I+ Sbjct: 303 LQALATAFGTASSSATLPITFKCLEENLGVDKRVTRFVLPVGATINMDGTALYEAVAAIF 362 Query: 317 VMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPINIMSMILPF 376 + Q N +E +F + I + + ++IG AGVP +LT +G+P +S+I Sbjct: 363 IAQLNNVELSFGQIVT-ISITATAASIGAAGVPQAGLVTMLIVLTAVGLPTKDISLIFAV 421 Query: 377 YSIVDMFETTLNVWSDSCVTVIVNKSYPKSSDHPENAIVQN 417 ++D TT+NV D+ IV K D + + Sbjct: 422 DWLLDRLRTTVNVLGDALGAGIVEHLSKKELDAADAQELAE 462 >gnl|CDD|32008 COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]. Length = 458 Score = 114 bits (286), Expect = 5e-26 Identities = 85/381 (22%), Positives = 173/381 (45%), Gaps = 27/381 (7%) Query: 32 TDYVIFNETAE---FIVNVFVRIFKFISLPLISLSLIVSLSKCVPEQGMGKLWGKTVFYT 88 TD + ET + + N +VR+ + I +PL+ +S++ +++K +GK+ T+ Sbjct: 54 TDSPVLKETIDWFNIVGNGYVRLLQMIVMPLVFISILSAIAKLDNASKLGKISLLTIGTL 113 Query: 89 MLTTMLAASVALCT---YGL-----------ISPSNMITKPDVAVNIGKMNFWNYVANLI 134 + TT +AA + + +GL + + I + + + +LI Sbjct: 114 LFTTAIAALIGILVALLFGLTAEGLVQGDAETARISEIQTY--VGKVADLTIPQLILSLI 171 Query: 135 PNNVVAPFL---ESQVIGILLISGSIGIATHFITDKHIKSSTIV--FFEGIHSIFLTITN 189 P N A + +I +++ + +GIA ++ K + + + SI + + Sbjct: 172 PKNPFADLTGANPTSIIAVVIFAAFLGIAALKLSKKDPEKGERFKAAIDTLQSIVMKLVR 231 Query: 190 WVMKIIPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPVILYIKGFNP 249 V+++ P + + + + +I LG ++ V + F+V ++L + G NP Sbjct: 232 LVIRLTPYGVLALMTKVVATSNLE-DIIKLGSFI-VASYIAIFIMFVVHGILLALNGVNP 289 Query: 250 LTIVKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAA- 308 + K ++P L AF S+SSA T+P+ + T + L + ++ F +I NGCA Sbjct: 290 IKYFKKVWPVLTFAFTSRSSAATIPLNIETQTRKLGVPEGIANFAASFGATIGQNGCAGI 349 Query: 309 FICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPIN 368 + + + V GI ++ IS+ G AGV G F + +L+ +G+P+ Sbjct: 350 YPAMLAVMVAPTVGINPLDPHFIATLIGVVTISSFGVAGVGGGATFAALIVLSALGLPVA 409 Query: 369 IMSMILPFYSIVDMFETTLNV 389 ++ +++ ++DM T LNV Sbjct: 410 LVGLLISIEPLIDMGRTALNV 430 >gnl|CDD|33431 COG3633, SstT, Na+/serine symporter [Amino acid transport and metabolism]. Length = 407 Score = 79.5 bits (196), Expect = 2e-15 Identities = 96/396 (24%), Positives = 164/396 (41%), Gaps = 25/396 (6%) Query: 20 VSSILIGIFSGTTDYVIFNETAE---FIVNVFVRIFKFISLPLISLSLIVSLSKCVPEQG 76 V ILIG+ G +I AE + +FV K ++ P++ L+++ S ++G Sbjct: 17 VKQILIGLVLGILLAIISPPAAEAVGLLGTLFVGALKAVA-PVLVFILVMA-SIANHKKG 74 Query: 77 MGKLWGKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDVAVNIGKMNFWNYVANLIPN 136 + +L T AA VA+ PS ++ + +L+ + Sbjct: 75 QKTNIRPIIVLYLLGTFSAALVAVIA-SFAFPSTLVLASSAGDISPPSGIVEVLKSLLMS 133 Query: 137 NVVAP---FLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEGIHSIFLTITNWVMK 193 V P L + IGIL + +G+A +H +T + I V++ Sbjct: 134 LVDNPINALLNANYIGILAWAIGLGLAL-----RHASDTTKNLVNDLSEAVSKIVKVVIR 188 Query: 194 IIPIALGSFIAVTILQFKKGLN-ISGLGEYLSVVILSNLIQGFIVLPVILYIK-GFNPLT 251 PI + +A T+ + G + G + L+V++ L +V P+I+Y K NP Sbjct: 189 FAPIGIFGLVASTLAE--TGFGALWGYAQLLAVLVGCMLFVALVVNPLIVYWKIRRNPYP 246 Query: 252 IVKGMFPALAV-AFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFI 310 +V V AFF++SSA +PV M +K L + + +P +INM G A I Sbjct: 247 LVLTCLRESGVTAFFTRSSAANIPVNMALCKK-LGLDEDTYSVSIPLGATINMAGAAITI 305 Query: 311 CITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLLTNMGIPINIM 370 + + + GI T L ++AS + A G +GV G L + GI ++ Sbjct: 306 TVLTLAAVHTLGIPVDLPTALLLSVVAS-VCACGASGVAGGSLLLIPLACSLFGISNDVA 364 Query: 371 SMILPFYSIV----DMFETTLNVWSDSCVTVIVNKS 402 ++ I+ D ET LN +D T ++ Sbjct: 365 MQVVAVGFIIGVLQDSAETALNSSTDVLFTAAACQA 400 >gnl|CDD|73326 cd02759, MopB_Acetylene-hydratase, The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.. Length = 477 Score = 29.8 bits (67), Expect = 1.6 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 308 AFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVP---MGCFFLSASLLTNMG 364 A I L Q NG + + + L + ++ G +P + L + Sbjct: 286 ACIQWGLAIDQQKNGTQTSRAIAILRAITGNLDVPGGNLLIPYPVKMLIVFGTNPLASYA 345 Query: 365 IPINIMS--MILPFYSIVDMFETTLNVWSD 392 ++ L F +VD+F T + +D Sbjct: 346 DTAPVLEALKALDFIVVVDLFMTPTAMLAD 375 >gnl|CDD|34360 COG4745, COG4745, Predicted membrane-bound mannosyltransferase [Posttranslational modification, protein turnover, chaperones]. Length = 556 Score = 28.4 bits (63), Expect = 4.2 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 9/82 (10%) Query: 184 FLTITNWVMKIIPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPVILY 243 L ++ +++ G + +T ++ L + +++ S PV++Y Sbjct: 79 LLGASDATARLVVAVTGVLLPLTAWLYRTRLGDKEVLALATLLAFS---------PVLVY 129 Query: 244 IKGFNPLTIVKGMFPALAVAFF 265 F ++ F LAV F Sbjct: 130 YSRFMRNDLLLAAFTLLAVGFA 151 >gnl|CDD|32100 COG1916, COG1916, Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]. Length = 388 Score = 27.1 bits (60), Expect = 9.0 Identities = 12/39 (30%), Positives = 17/39 (43%) Query: 308 AFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTA 346 A + I LI + G + L W L V+SA+G Sbjct: 257 AALLIFLIVICFGLGGDLLLDALLQWFLFNGVLSALGAL 295 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.326 0.139 0.408 Gapped Lambda K H 0.267 0.0736 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,897,806 Number of extensions: 267166 Number of successful extensions: 1058 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1027 Number of HSP's successfully gapped: 101 Length of query: 420 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 324 Effective length of database: 4,189,273 Effective search space: 1357324452 Effective search space used: 1357324452 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 59 (26.5 bits)