BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781171|ref|YP_003065584.1| hypothetical protein CLIBASIA_05390 [Candidatus Liberibacter asiaticus str. psy62] (420 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781171|ref|YP_003065584.1| hypothetical protein CLIBASIA_05390 [Candidatus Liberibacter asiaticus str. psy62] Length = 420 Score = 836 bits (2159), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/420 (100%), Positives = 420/420 (100%) Query: 1 MSLGKMITLDKQQKAYLLYVSSILIGIFSGTTDYVIFNETAEFIVNVFVRIFKFISLPLI 60 MSLGKMITLDKQQKAYLLYVSSILIGIFSGTTDYVIFNETAEFIVNVFVRIFKFISLPLI Sbjct: 1 MSLGKMITLDKQQKAYLLYVSSILIGIFSGTTDYVIFNETAEFIVNVFVRIFKFISLPLI 60 Query: 61 SLSLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDVAVN 120 SLSLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDVAVN Sbjct: 61 SLSLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDVAVN 120 Query: 121 IGKMNFWNYVANLIPNNVVAPFLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEGI 180 IGKMNFWNYVANLIPNNVVAPFLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEGI Sbjct: 121 IGKMNFWNYVANLIPNNVVAPFLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEGI 180 Query: 181 HSIFLTITNWVMKIIPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPV 240 HSIFLTITNWVMKIIPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPV Sbjct: 181 HSIFLTITNWVMKIIPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPV 240 Query: 241 ILYIKGFNPLTIVKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTS 300 ILYIKGFNPLTIVKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTS Sbjct: 241 ILYIKGFNPLTIVKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTS 300 Query: 301 INMNGCAAFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLL 360 INMNGCAAFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLL Sbjct: 301 INMNGCAAFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLL 360 Query: 361 TNMGIPINIMSMILPFYSIVDMFETTLNVWSDSCVTVIVNKSYPKSSDHPENAIVQNSVE 420 TNMGIPINIMSMILPFYSIVDMFETTLNVWSDSCVTVIVNKSYPKSSDHPENAIVQNSVE Sbjct: 361 TNMGIPINIMSMILPFYSIVDMFETTLNVWSDSCVTVIVNKSYPKSSDHPENAIVQNSVE 420 >gi|254780387|ref|YP_003064800.1| C4-dicarboxylate transporter DctA [Candidatus Liberibacter asiaticus str. psy62] Length = 426 Score = 56.2 bits (134), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 80/384 (20%), Positives = 173/384 (45%), Gaps = 38/384 (9%) Query: 46 NVFVRIFKFISLPLISLSLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGL 105 ++FV+ K + P+I L++ +++ + +G+++ K +F + +M A + L Sbjct: 49 DIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIV--- 105 Query: 106 ISPSNMITKPDVAVNIG----------------KMNFWNYVANLIPNNVVAPFLESQVIG 149 I KP + +N+ +F ++ ++IP+ ++ ++ Sbjct: 106 ----GNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQ 161 Query: 150 ILLISGSIGIATHFITDKHIKSSTIV-FFEGIHSIFLTITNWVMKIIPIALGSFIAVTIL 208 L+++ GI+ + + KS TI E I+ + + VM+I P LG+F A++ Sbjct: 162 TLIVALLFGISLSLVGE---KSDTIRKCLEEINFPVFRMVSIVMRIAP--LGAFGAMSFT 216 Query: 209 QFKKGLNISGLGEYLSVVILSNLIQGFIVLPVILYIKGFNPLTIVKGMF---PALAVAFF 265 K GL S + + +V F +L V+ + F +I+K + + + Sbjct: 217 IGKYGL--SSISNLIFLVFCLYATSAFFILGVLGILARFCRFSIIKLIIFLKEEVLLVLS 274 Query: 266 SKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITLIYVMQNNGIEA 325 + SS LP M+ E+ + ++P S N++G +I + +++ Q + Sbjct: 275 TSSSESALPGLMKKMEEA-GCHRSIVSMVVPTGYSFNLDGSNIYITLATLFISQATNVPL 333 Query: 326 TFSTLFLWILMASVISAIGTAGVPMGCFF-LSASLLTNMGIPINIMSMILPFYSIVDMFE 384 + + L +L+ +++S+ G AGV F L+A++ +PI M++IL + Sbjct: 334 SLTDQ-LSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIAGMTLILGVDRFMSECR 392 Query: 385 TTLNVWSDSCVTVIVNKSYPKSSD 408 + N ++ +TV+V++ + K D Sbjct: 393 SVTNFIGNAVMTVVVSR-WEKKLD 415 >gi|255764462|ref|YP_003064709.2| methionyl-tRNA formyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 310 Score = 28.5 bits (62), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 13/95 (13%) Query: 87 YTMLTTMLAASVALCTYGLISPSNMITKPDVAVNIGKMNFWNYVANLIPN-NVVAPFLES 145 Y + A + YGL+ P ++ N K+ F+N A+L+P AP + Sbjct: 73 YEQFLSFNADVAVVVAYGLVIPQRIL-------NATKLGFYNGHASLLPRWRGAAPIQRA 125 Query: 146 QVIGILLISGSIGIATHFITDKHIKSSTIVFFEGI 180 I+ GIA DKH+ + + F + Sbjct: 126 ----IMAGDNETGIAI-MKMDKHLDTGPVAFMRKV 155 >gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str. psy62] Length = 781 Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 22/34 (64%) Query: 134 IPNNVVAPFLESQVIGILLISGSIGIATHFITDK 167 +P N V+ ++ +V L +GS+GIAT++ DK Sbjct: 421 LPANDVSDYVILRVSVKQLSAGSVGIATNYEVDK 454 >gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Liberibacter asiaticus str. psy62] Length = 336 Score = 23.5 bits (49), Expect = 6.9, Method: Compositional matrix adjust. Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Query: 365 IPINIMSMILPFYSIVDMFETTLNVWSDSCVTVIVNKSYPKSSDHPEN 412 I + ++S I PF SI + + D+ ++ ++YP DHP N Sbjct: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYP---DHPWN 52 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 23.1 bits (48), Expect = 9.8, Method: Compositional matrix adjust. Identities = 10/24 (41%), Positives = 15/24 (62%) Query: 350 MGCFFLSASLLTNMGIPINIMSMI 373 +G F +LLT + IP+NI+ I Sbjct: 294 VGDFVFINTLLTQLAIPLNILGTI 317 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.326 0.139 0.408 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 256,046 Number of Sequences: 1233 Number of extensions: 10240 Number of successful extensions: 43 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 10 length of query: 420 length of database: 328,796 effective HSP length: 76 effective length of query: 344 effective length of database: 235,088 effective search space: 80870272 effective search space used: 80870272 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 39 (19.6 bits)