BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781171|ref|YP_003065584.1| hypothetical protein
CLIBASIA_05390 [Candidatus Liberibacter asiaticus str. psy62]
         (420 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781171|ref|YP_003065584.1| hypothetical protein CLIBASIA_05390 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 420

 Score =  836 bits (2159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/420 (100%), Positives = 420/420 (100%)

Query: 1   MSLGKMITLDKQQKAYLLYVSSILIGIFSGTTDYVIFNETAEFIVNVFVRIFKFISLPLI 60
           MSLGKMITLDKQQKAYLLYVSSILIGIFSGTTDYVIFNETAEFIVNVFVRIFKFISLPLI
Sbjct: 1   MSLGKMITLDKQQKAYLLYVSSILIGIFSGTTDYVIFNETAEFIVNVFVRIFKFISLPLI 60

Query: 61  SLSLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDVAVN 120
           SLSLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDVAVN
Sbjct: 61  SLSLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGLISPSNMITKPDVAVN 120

Query: 121 IGKMNFWNYVANLIPNNVVAPFLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEGI 180
           IGKMNFWNYVANLIPNNVVAPFLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEGI
Sbjct: 121 IGKMNFWNYVANLIPNNVVAPFLESQVIGILLISGSIGIATHFITDKHIKSSTIVFFEGI 180

Query: 181 HSIFLTITNWVMKIIPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPV 240
           HSIFLTITNWVMKIIPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPV
Sbjct: 181 HSIFLTITNWVMKIIPIALGSFIAVTILQFKKGLNISGLGEYLSVVILSNLIQGFIVLPV 240

Query: 241 ILYIKGFNPLTIVKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTS 300
           ILYIKGFNPLTIVKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTS
Sbjct: 241 ILYIKGFNPLTIVKGMFPALAVAFFSKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTS 300

Query: 301 INMNGCAAFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLL 360
           INMNGCAAFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLL
Sbjct: 301 INMNGCAAFICITLIYVMQNNGIEATFSTLFLWILMASVISAIGTAGVPMGCFFLSASLL 360

Query: 361 TNMGIPINIMSMILPFYSIVDMFETTLNVWSDSCVTVIVNKSYPKSSDHPENAIVQNSVE 420
           TNMGIPINIMSMILPFYSIVDMFETTLNVWSDSCVTVIVNKSYPKSSDHPENAIVQNSVE
Sbjct: 361 TNMGIPINIMSMILPFYSIVDMFETTLNVWSDSCVTVIVNKSYPKSSDHPENAIVQNSVE 420


>gi|254780387|ref|YP_003064800.1| C4-dicarboxylate transporter DctA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 426

 Score = 56.2 bits (134), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/384 (20%), Positives = 173/384 (45%), Gaps = 38/384 (9%)

Query: 46  NVFVRIFKFISLPLISLSLIVSLSKCVPEQGMGKLWGKTVFYTMLTTMLAASVALCTYGL 105
           ++FV+  K +  P+I L++   +++    + +G+++ K +F   + +M A  + L     
Sbjct: 49  DIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIV--- 105

Query: 106 ISPSNMITKPDVAVNIG----------------KMNFWNYVANLIPNNVVAPFLESQVIG 149
                 I KP + +N+                   +F  ++ ++IP+  ++      ++ 
Sbjct: 106 ----GNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQ 161

Query: 150 ILLISGSIGIATHFITDKHIKSSTIV-FFEGIHSIFLTITNWVMKIIPIALGSFIAVTIL 208
            L+++   GI+   + +   KS TI    E I+     + + VM+I P  LG+F A++  
Sbjct: 162 TLIVALLFGISLSLVGE---KSDTIRKCLEEINFPVFRMVSIVMRIAP--LGAFGAMSFT 216

Query: 209 QFKKGLNISGLGEYLSVVILSNLIQGFIVLPVILYIKGFNPLTIVKGMF---PALAVAFF 265
             K GL  S +   + +V        F +L V+  +  F   +I+K +      + +   
Sbjct: 217 IGKYGL--SSISNLIFLVFCLYATSAFFILGVLGILARFCRFSIIKLIIFLKEEVLLVLS 274

Query: 266 SKSSAGTLPVTMRTAEKNLNISPEVSRSILPFCTSINMNGCAAFICITLIYVMQNNGIEA 325
           + SS   LP  M+  E+       +   ++P   S N++G   +I +  +++ Q   +  
Sbjct: 275 TSSSESALPGLMKKMEEA-GCHRSIVSMVVPTGYSFNLDGSNIYITLATLFISQATNVPL 333

Query: 326 TFSTLFLWILMASVISAIGTAGVPMGCFF-LSASLLTNMGIPINIMSMILPFYSIVDMFE 384
           + +   L +L+ +++S+ G AGV    F  L+A++     +PI  M++IL     +    
Sbjct: 334 SLTDQ-LSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIAGMTLILGVDRFMSECR 392

Query: 385 TTLNVWSDSCVTVIVNKSYPKSSD 408
           +  N   ++ +TV+V++ + K  D
Sbjct: 393 SVTNFIGNAVMTVVVSR-WEKKLD 415


>gi|255764462|ref|YP_003064709.2| methionyl-tRNA formyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 310

 Score = 28.5 bits (62), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 13/95 (13%)

Query: 87  YTMLTTMLAASVALCTYGLISPSNMITKPDVAVNIGKMNFWNYVANLIPN-NVVAPFLES 145
           Y    +  A    +  YGL+ P  ++       N  K+ F+N  A+L+P     AP   +
Sbjct: 73  YEQFLSFNADVAVVVAYGLVIPQRIL-------NATKLGFYNGHASLLPRWRGAAPIQRA 125

Query: 146 QVIGILLISGSIGIATHFITDKHIKSSTIVFFEGI 180
               I+      GIA     DKH+ +  + F   +
Sbjct: 126 ----IMAGDNETGIAI-MKMDKHLDTGPVAFMRKV 155


>gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 781

 Score = 25.0 bits (53), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 134 IPNNVVAPFLESQVIGILLISGSIGIATHFITDK 167
           +P N V+ ++  +V    L +GS+GIAT++  DK
Sbjct: 421 LPANDVSDYVILRVSVKQLSAGSVGIATNYEVDK 454


>gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 336

 Score = 23.5 bits (49), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 365 IPINIMSMILPFYSIVDMFETTLNVWSDSCVTVIVNKSYPKSSDHPEN 412
           I + ++S I PF SI +  +       D+    ++ ++YP   DHP N
Sbjct: 8   IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYP---DHPWN 52


>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 597

 Score = 23.1 bits (48), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 350 MGCFFLSASLLTNMGIPINIMSMI 373
           +G F    +LLT + IP+NI+  I
Sbjct: 294 VGDFVFINTLLTQLAIPLNILGTI 317


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.326    0.139    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 256,046
Number of Sequences: 1233
Number of extensions: 10240
Number of successful extensions: 43
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 10
length of query: 420
length of database: 328,796
effective HSP length: 76
effective length of query: 344
effective length of database: 235,088
effective search space: 80870272
effective search space used: 80870272
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 39 (19.6 bits)