HHsearch alignment for GI: 254781172 and conserved domain: COG0272
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=1632.49 Aligned_cols=663 Identities=42% Similarity=0.750 Sum_probs=630.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 89999999999999999999984331779820878999999999999897720311589999620036432357750451
Q gi|254781172|r 12 LSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTH 91 (731)
Q Consensus 12 ~s~~~~~~~i~~L~~~i~~~~~~Yy~~~~p~isD~eYD~L~~~L~~le~~~p~~~~~~~p~spt~~Vg~~~~~~~~kv~H 91 (731)
T Consensus 2 ~~~~~~~~~i~~L~~~L~~~~~~Yyv~d~P~VsD~eYD~L~reL~~lE~~~Pel~~---~dSPtqrVG~~~~~~F~kv~H 78 (667)
T COG0272 2 WSMAEAQEEIEELRELLNKHDYRYYVLDAPSVSDAEYDQLYRELQELEEKHPELIT---PDSPTQRVGAAPLNAFKKVRH 78 (667)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCHHCCCCCCC
T ss_conf 53678999999999999997788722699979858999999999999986877678---999965557430100453347
Q ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 66425702159999999999999986124677761199994158189999985998998886598655666999775310
Q gi|254781172|r 92 SIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIP 171 (731)
Q Consensus 92 ~~pMlSL~k~~~~~el~~w~~~~~~~~~~~~~~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~ 171 (731)
T Consensus 79 ~~pMlSL~naf~~~el~~f~~ri~~~~~~----~~~y~~EpKiDGlsisL~YenG~Lv~aaTRGdG~~GEDiT~NvrtI~ 154 (667)
T COG0272 79 PVPMLSLDNAFDEEELRAFDRRIRKFLGD----SVEYVVEPKIDGLAISLVYENGKLVRAATRGDGTTGEDITANVRTIR 154 (667)
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHCCC----CCCEEEEEECCEEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 87554344227989999999999875178----86568886236189999997899988624679962642222140265
Q ss_pred CCCCCCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHH-HCCCEEEEEEECCCCC-C
Q ss_conf 2432233544550489999998520212345564314854334234567777523455553-0111056641024543-3
Q gi|254781172|r 172 TIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE-I 249 (731)
Q Consensus 172 ~iP~~l~~~~~~~ieiRGEv~m~~~~F~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~-~r~L~f~ay~~~~~~~-~ 249 (731)
T Consensus 155 ~IP~~l~~-~p~~lEVRGEvfm~k~~F~~lN~~~~~~g~~~faNpRNaAAGsLRqlD~~ita~R~L~~f~y~~~~~~~~~ 233 (667)
T COG0272 155 SIPLKLPG-APAVLEVRGEVFMPKEDFEALNEEREEEGEKPFANPRNAAAGSLRQLDPKITAKRKLGFFIYAVGDGEEGL 233 (667)
T ss_pred HHHHHCCC-CCCEEEEEEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 54333257-88538997689977899999999999847988678044555466536968774177359998677667677
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCEEEEC
Q ss_conf 21000036899997599665414887403211345566553100112343763777311000111587656866312311
Q gi|254781172|r 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHK 329 (731)
Q Consensus 250 ~~~~~~e~l~~L~~~GF~v~~~~~~~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~PrwaiA~K 329 (731)
T Consensus 234 ~~~t~~e~l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~~~~~R~~L~y~IDGvViKvn~l~~q~~lG~tsk~PrWAiAyK 313 (667)
T COG0272 234 LADTQSERLAFLKAWGFPVNPYTRLCKNADEVLAFYEEWEKKRASLPYDIDGVVIKVNDLALQRELGFTSKAPRWAIAYK 313 (667)
T ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHCCCCCCCCEEEEEC
T ss_conf 74579999999997599988076660899999999999986322289766438999676888987097068986323553
Q ss_pred CCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEECCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 45621589987889940356225899997433302640001014898999750234543222468440768999835870
Q gi|254781172|r 330 FAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEV 409 (731)
Q Consensus 330 f~~e~~~T~v~~I~wqvgRtG~itPva~~ePV~l~G~~V~ratlhN~~~I~~l~~~~~~~~~~~~I~iGd~V~I~RaGdV 409 (731)
T Consensus 314 Fpa~e~~T~l~dI~~qVGRTG~iTPvA~L~PV~laG~~VsrATLHN~d~I~r-----------kdIrIGDtV~V~kAGdV 382 (667)
T COG0272 314 FPAEEAVTKLLDIEVQVGRTGAITPVARLEPVELAGVTVSRATLHNVDEIKR-----------KDIRIGDTVVVRKAGDV 382 (667)
T ss_pred CCCHHEEEEEEEEEEECCCCEEEEEEEEEEEEEECCEEEEEEECCCHHHHHH-----------CCCCCCCEEEEEECCCC
T ss_conf 7732214689999995268536413379776998798999762388888986-----------38787999999736887
Q ss_pred HHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 25665410123578730477704326577501033786544521010035434411446655332130123103541035
Q gi|254781172|r 410 IPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQ 489 (731)
Q Consensus 410 IP~I~~Vi~~~r~~~~~~~~~P~~CP~Cgs~l~~~~~~~~~~~~~~~rC~n~~~Cpaq~~~~i~hF~SK~aldI~GLG~k 489 (731)
T Consensus 383 IP~V~~Vv~e~R~~~~~~~~~P~~CP~C~s~l~r~~~e------~~~rC~n~~~C~aq~~e~l~hfvSr~AmdI~GLG~k 456 (667)
T COG0272 383 IPQVVGVVLEKRPGNEKPIPFPTHCPVCGSELVREEGE------VVIRCTNGLNCPAQLKERLIHFVSRNALDIDGLGEK 456 (667)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCC------EEEECCCCCCCHHHHHHHEEEEECCCCCCCCCCCHH
T ss_conf 77323554344779998888999798899976742675------568668987885888623346744786577776799
Q ss_pred HHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 55565305765404541011010677753100010001342100145689999875223466677630101111689999
Q gi|254781172|r 490 QLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARS 569 (731)
Q Consensus 490 ~Ie~L~e~~~~~g~I~~~~DLy~L~~~~~~~~~~l~~l~GfgeKsa~nL~~sIe~sK~~~L~r~L~ALGI~~vG~~~Ak~ 569 (731)
T Consensus 457 ~i~~L~e~~----lI~~~~Dly~Lt~~~------l~~l~~~~~ks~~nLl~aIe~sK~~~l~r~l~aLGIr~VG~~~Ak~ 526 (667)
T COG0272 457 IIEQLFEKG----LIKDIADLYTLTEED------LLSLEGFGEKSAENLLNAIEKSKKQPLARFLYALGIRHVGETTAKS 526 (667)
T ss_pred HHHHHHHCC----CCCCHHHHHHCCHHH------HHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHH
T ss_conf 999999737----537879877378988------8416224465799999999986049899999987971140899999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCC
Q ss_conf 99882998999997897761251177876138886789999999996697999999999973387765432246-88216
Q gi|254781172|r 570 LAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNV-SSEIE 648 (731)
Q Consensus 570 La~~f~si~~l~~~~~~~~~~~~~~~e~L~~I~GiG~~~A~si~~ff~~~~n~~~i~~L~~~~~~~~~~~~~~~-~~~l~ 648 (731)
T Consensus 527 La~~f~sl~~l~~a----------~~e~l~~i~giG~~vA~si~~ff~~~~~~~li~~L~~~g~~~~~~~~~~~~~~~l~ 596 (667)
T COG0272 527 LARHFGTLEALLAA----------SEEELASIPGIGEVVARSIIEFFANEENRELIDELLAAGVKWEEEEKISIETSPLA 596 (667)
T ss_pred HHHHHHHHHHHHHC----------CHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 99876029999842----------99999506661289999999997277789999999971787221002333444457
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCEEEEEECCCCCCHHHHHHHCCCEEECHHHHHHHHH
Q ss_conf 86699972588998789999999829849981116321799778888637989974991737999999998
Q gi|254781172|r 649 NKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 (731)
Q Consensus 649 gk~vV~TGtl~~~~R~e~~~~ie~~Ggkv~sSVSkkT~~LI~ge~~gSKl~KA~~LgI~Ii~e~ef~~ll~ 719 (731)
T Consensus 597 gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~eLgv~i~~E~~~~~ll~ 667 (667)
T COG0272 597 GKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQELGVKIIDEEEFLALLG 667 (667)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCCEEECEECCCCEEEEECCCCCHHHHHHHHCCCEEECHHHHHHHHC
T ss_conf 97799966678789999999999869999210415410899758977078889974986745999998649