HHsearch alignment for GI: 254781172 and conserved domain: COG1423
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair].
Probab=97.24 E-value=0.012 Score=39.63 Aligned_cols=174 Identities=18% Similarity=0.184 Sum_probs=105.7
Q ss_pred ECCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 51664257021599999999999999861246777611999941581899999859989988865986556669997753
Q gi|254781172|r 90 THSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA 169 (731)
Q Consensus 90 ~H~~pMlSL~k~~~~~el~~w~~~~~~~~~~~~~~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~ 169 (731)
T Consensus 69 PkI~R~llL~p~-----ik~~F------------~~~~v~VEEKmnGYNVRV~k~~g~-vyAiTRg-G~ICPfTT~r~~~ 129 (382)
T COG1423 69 PKIRRALLLEPT-----IKKHF------------GRGKVVVEEKMNGYNVRVVKLGGE-VYAITRG-GLICPFTTERLRD 129 (382)
T ss_pred CHHHEEECCCHH-----HHHHC------------CCCCEEEEEECCCCEEEEEEECCE-EEEEECC-CEECCCHHHHHHH
T ss_conf 404213226633-----68654------------898479997226715899998899-9998148-5246760677776
Q ss_pred HCCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCC
Q ss_conf 10243223354455048999999852021234556431485433423456777752345555301110566410245433
Q gi|254781172|r 170 IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI 249 (731)
Q Consensus 170 i~~iP~~l~~~~~~~ieiRGEv~m~~~~F~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~r~L~f~ay~~~~~~~~ 249 (731)
T Consensus 130 l--~~~eff~d~p~-lvlcgEmvG~e-------------------nPY--v~-----~~~-y~~e~v~fFvFDire~~tg 179 (382)
T COG1423 130 L--IDLEFFDDYPD-LVLCGEMVGPE-------------------NPY--VP-----GPY-YEKEDVGFFVFDIREKNTG 179 (382)
T ss_pred H--CCHHHHHHCCC-CEEEEEECCCC-------------------CCC--CC-----CCC-CCCCCCEEEEEEEEECCCC
T ss_conf 4--35456763898-58999750678-------------------998--77-----898-7657740899998755889
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCEEEEECCCCH----HHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCC
Q ss_conf 21000036899997599665414887403211----345566553100112343763777311000111587656
Q gi|254781172|r 250 FAKGQYEMLQKMRCLGFPVNNGVRQANTFHGI----VSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320 (731)
Q Consensus 250 ~~~~~~e~l~~L~~~GF~v~~~~~~~~~~~~~----~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~ 320 (731)
T Consensus 180 r~Lp~eer~~l~ekYgl~~V~~fg~~-~~~e~~eei~eIve~L~k------eGREGVV~Kdpdm~~-~plKYtTs 246 (382)
T COG1423 180 RPLPVEERLELAEKYGLPHVEIFGEF-PADEAGEEIYEIVERLNK------EGREGVVMKDPDMRV-PPLKYTTS 246 (382)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEEEE-CHHHHHHHHHHHHHHHHH------CCCCCEEECCCCCCC-CCCEEECC
T ss_conf 97899999978987098706774266-366768999999999735------577535863813356-86331125