HHsearch alignment for GI: 254781172 and conserved domain: COG1796
>COG1796 POL4 DNA polymerase IV (family X) [DNA replication, recombination, and repair].
Probab=94.23 E-value=0.51 Score=27.07 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=30.4
Q ss_pred HHHCCHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 763010111168999999882--99899999789776125117787613888678999999999
Q gi|254781172|r 554 IFSLGIRHVGAEIARSLAKYY--LSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEF 615 (731)
Q Consensus 554 L~ALGI~~vG~~~Ak~La~~f--~si~~l~~~~~~~~~~~~~~~e~L~~I~GiG~~~A~si~~f 615 (731)
T Consensus 93 ~~Ll~v~GlGpkKi~~Ly~elgi~~~e~l~~a~~~---------~~~~~l~GfG~kse~~il~~ 147 (326)
T COG1796 93 EPLLKVPGLGPKKIVSLYKELGIKDLEELQEALEN---------GKIRGLRGFGKKSEAKILEN 147 (326)
T ss_pred HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH---------CCCCCCCCCCCHHHHHHHHH
T ss_conf 87860779892889999999786649999999984---------77032678560219999999