HHsearch alignment for GI: 254781172 and conserved domain: PHA00454
>PHA00454 ATP-dependent DNA ligase.
Probab=98.80 E-value=5.1e-06 Score=65.70 Aligned_cols=240 Identities=16% Similarity=0.117 Sum_probs=118.0
Q ss_pred CCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC---CCCCCEEEEEEEEEEECHHHHHH
Q ss_conf 611999941581899999859989988865986556669997753102432233---54455048999999852021234
Q gi|254781172|r 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLS---LNIPEIIEVRGEVYISKNDFLAL 201 (731)
Q Consensus 125 ~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l~---~~~~~~ieiRGEv~m~~~~F~~l 201 (731)
T Consensus 26 ~G~~ivE~KyDGvRvqi~~~g~~~~~~~SR-~gk~~p~L~hi~~~-~~~~~l~~~~~~~~~~g~VLDGEv~~~~~dFq-- 101 (312)
T PHA00454 26 AGYLIADVKYDGVRGNIVVDGTADSVWLSR-VSKRIPALEHLNGD-RRWRKLLNDDRCIFPDGFMLDGELMVKGVDFN-- 101 (312)
T ss_pred CCCEEEEECCCEEEEEEEEECCEEEEEEEC-CCCCCCCCHHHHHH-HHHHHHHCHHHHHCCCCEEEEEEEECCCCCHH--
T ss_conf 894899966350799999948914999944-88765441556666-66787614255516898799848965889988--
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHCCCHHH-H-HCCCEEEEEEECCCCC------C-----CCCCCHHHHHHHHHCCCCC
Q ss_conf 556431485433423456777752345555-3-0111056641024543------3-----2100003689999759966
Q gi|254781172|r 202 NDEMIAVGRKPYANPRNAASGILRRLNPTD-I-TRYLNFFVHGLGKTSE------I-----FAKGQYEMLQKMRCLGFPV 268 (731)
Q Consensus 202 N~~~~~~g~~~f~NpRN~aaG~lr~~d~~~-~-~r~L~f~ay~~~~~~~------~-----~~~~~~e~l~~L~~~GF~v 268 (731)
T Consensus 102 -----------------~i~~rvRrK~~~~~~~~~~l~~~~FDil~l~~~~~g~~~~~~~~~~~err~~l~~~l~~~~~~ 164 (312)
T PHA00454 102 -----------------TGSGLLRTKKVLFKLHLKKLHVVVYDVTPLDVIESGEDYDVMHLVMREHVEAMRPLLEEYFPE 164 (312)
T ss_pred -----------------HHHHHHEECCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf -----------------998876017786211000638999778831110356543200121399999999988760886
Q ss_pred CCCE----EEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCEEEECCCCC-EEEEEEEEEE
Q ss_conf 5414----8874032113455665531001123437637773110001115876568663123114562-1589987889
Q gi|254781172|r 269 NNGV----RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEK-QASTRLLDID 343 (731)
Q Consensus 269 ~~~~----~~~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~PrwaiA~Kf~~e-~~~T~v~~I~ 343 (731)
T Consensus 165 i~~~~~e~~~v~~~~~l~~l~~~a------l~~g~EG~m~k~~~~~y~--~g---r~~~---~~K~Kp~~~~d~~v~~~~ 230 (312)
T PHA00454 165 IDWVLAESYEVYDMESLQELYEKK------RAEGHEGLVVKDPLLIYK--RG---KKSG---WWKMKPECEADGIIVGVV 230 (312)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHH------HHCCCCEEEEECCCCCCC--CC---CCCC---EEEECCCCEEEEEEEEEE
T ss_conf 526985203368999999999999------857984688867998755--88---7265---088655604579999887
Q ss_pred EEECCC---CEEE-EEEEEEEEEECCCEEEEECCCCHHHHHHHCCC-CCCCCCCCCCCCCCEEEEE
Q ss_conf 940356---2258-99997433302640001014898999750234-5432224684407689998
Q gi|254781172|r 344 IQIGRT---GILT-PVARLEPVNIGGALITNATLHNEDYIKGLDAS-GKVMRGGRDIRVGDRVLVK 404 (731)
Q Consensus 344 wqvgRt---G~it-Pva~~ePV~l~G~~V~ratlhN~~~I~~l~~~-~~~~~~~~~I~iGd~V~I~ 404 (731)
T Consensus 231 ~G~~~~~~~Gk~~~f~v~~e----dg~~-~~~~g~~~~~~~~~t~~~~~~~~~~~~~~~G~~~ei~ 291 (312)
T PHA00454 231 WGTPGLANEGKVIGFRVLLE----DGRV-VNATGISRALMDEFTANVKEHHIDEPMPYNGWACQVS 291 (312)
T ss_pred ECCCCCCCCCCEEEEEEEEC----CCCE-EECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 04677666564688999956----8977-8636776667656308788650124566465599999