HHsearch alignment for GI: 254781172 and conserved domain: PRK03180
>PRK03180 ligB ATP-dependent DNA ligase; Reviewed.
Probab=98.23 E-value=0.00023 Score=52.90 Aligned_cols=239 Identities=18% Similarity=0.220 Sum_probs=126.1
Q ss_pred CCC-CCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 166-4257021599999999999999861246777611999941581899999859989988865986556669997753
Q gi|254781172|r 91 HSI-PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRA 169 (731)
Q Consensus 91 H~~-pMlSL~k~~~~~el~~w~~~~~~~~~~~~~~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~ 169 (731)
T Consensus 182 ~Pv~pmLA~~-~~~~~~~~~~~-------------~~~~~~E~K~DG~R~Qih~~g~~-v~l~SR----~~ediT~~fPe 242 (509)
T PRK03180 182 RPVGPMLAQT-ATSVAEALERL-------------GGTAAVEAKLDGARVQIHRDGDD-VRVYTR----SLDDVTARLPE 242 (509)
T ss_pred CCCCCEECCC-CCCHHHHHHHC-------------CCCEEEEEEECEEEEEEEEECCE-EEEECC----CCCCCHHHHHH
T ss_conf 9867630897-99989999864-------------98747997305189999997999-999858----98602345579
Q ss_pred HCCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC-CHHH--HHCCCEEEEEEECCC
Q ss_conf 1024322335445504899999985202123455643148543342345677775234-5555--301110566410245
Q gi|254781172|r 170 IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRL-NPTD--ITRYLNFFVHGLGKT 246 (731)
Q Consensus 170 i~~iP~~l~~~~~~~ieiRGEv~m~~~~F~~lN~~~~~~g~~~f~NpRN~aaG~lr~~-d~~~--~~r~L~f~ay~~~~~ 246 (731)
T Consensus 243 iv~~~~~~~---~~~~ILDGEiva~~~~-----------G~~---~~Fq~l~~R~~rk~~~~~~~~~~pv~~~~FDlL~~ 305 (509)
T PRK03180 243 VVEAVLALP---VRSLVLDGEAIALRPD-----------GRP---RPFQVTASRFGRSVDVAAAAATQPLSVFFFDILHL 305 (509)
T ss_pred HHHHHHHCC---CCCEEECCEEEEECCC-----------CCC---CCHHHHHHHHCCCCCHHHHHHCCCEEEEEEEEEEE
T ss_conf 999998479---8534675479998899-----------988---73799987641255067775308859998745203
Q ss_pred CCCC--CCCCHHHHHHHHHCC---CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCC
Q ss_conf 4332--100003689999759---96654148874032113455665531001123437637773110001115876568
Q gi|254781172|r 247 SEIF--AKGQYEMLQKMRCLG---FPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARS 321 (731)
Q Consensus 247 ~~~~--~~~~~e~l~~L~~~G---F~v~~~~~~~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~ 321 (731)
T Consensus 306 ~G~dl~~~Pl~eRR~~Le~~~~~~~~~-~-~~~~~~~~~~~~~~~~------a~~~g~EGlm~K~~dS~Y~p----GrR~ 373 (509)
T PRK03180 306 DGRDLLDAPTTERLAALDALVPARHRV-P-RLVTADPAAAAAFLDA------TLAAGHEGVMAKSLAAPYEA----GRRG 373 (509)
T ss_pred CCCCHHHCCHHHHHHHHHHHCCCCCCC-C-CEECCCHHHHHHHHHH------HHHCCCEEEEEECCCCCCCC----CCCC
T ss_conf 884033187999999999844631356-7-1224899999999999------98669806898269998789----9878
Q ss_pred CCCEEEECCCC-CEEEEEEEEEEEEECC-CCEEEE--EEEEEEEEECCCEEEEE-CCCCHHHHH
Q ss_conf 66312311456-2158998788994035-622589--99974333026400010-148989997
Q gi|254781172|r 322 PRWMISHKFAE-KQASTRLLDIDIQIGR-TGILTP--VARLEPVNIGGALITNA-TLHNEDYIK 380 (731)
Q Consensus 322 PrwaiA~Kf~~-e~~~T~v~~I~wqvgR-tG~itP--va~~ePV~l~G~~V~ra-tlhN~~~I~ 380 (731)
T Consensus 374 ~~W---~K~K~~~tlD~ViiGa~~G~GkR~g~~s~~llg~~d~~~~~~~~vgKvgsGftD~~l~ 434 (509)
T PRK03180 374 AGW---LKVKPVHTLDLVVLAVEWGSGRRRGKLSNLHLGARDPATGGFVMLGKTFKGMTDAMLA 434 (509)
T ss_pred CCC---EEECCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCHHHHH
T ss_conf 772---6644776540899963518888788744259998838999589997636789989999